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MT104122.1__QIG62564.1__X__00050

Bact-Vir

MT104122.1__QIG62564.1__X__00050

Identity

Accession:
MT104122 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sporosarcina_phage_Lietuvens

TaxID: 2713145

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-84
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_0-10091_curated_closed_complete_start-adj_prodigal-single.1__X__X__00321__D6-92
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.53 36.0 2.61e-01 70.1% 55.4%
1uxyA03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 41.0 3.40e-01 93.5% 68.0%
5jzxD02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 41.0 3.38e-01 92.2% 56.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4883095 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.75 30.0 4.44e-01 80.5% 100.0%
3712524 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.68 43.0 4.94e-01 100.0% 90.9%
3598807 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 43.0 4.56e-01 98.7% 72.5%
3605531 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.66 43.0 4.26e-01 100.0% 61.9%
3514631 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.52 35.0 3.03e-01 70.1% 88.7%
3739884 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.51 35.0 2.93e-01 70.1% 81.4%
3994540 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 38.0 2.63e-01 84.4% 56.8%
D2 high residues 230-343
PDB
Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_1000007218__D192-304
D3 medium residues 99-153
PDB
Domain cluster: rep: MT104122.1__QIG62564.1__X__00050__D171-224
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 41.4 1.80e-10 81.8% 82.1%
D4 medium residues 171-224
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 49.5 5.30e-13 87.0% 82.1%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 46.0 4.72e-01 87.0% 100.0%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 40.0 3.15e-01 72.2% 90.6%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.93e-01 87.0% 69.0%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 3.39e-01 94.4% 86.7%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.71e-01 100.0% 83.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 43.0 4.50e-01 92.6% 95.8%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 3.87e-01 85.2% 78.6%
3ktzA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.52 42.0 3.78e-01 94.4% 85.5%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.65e-01 98.1% 90.1%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 35.0 2.23e-01 72.2% 76.3%
2i5tA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.52 40.0 2.93e-01 88.9% 62.1%
2jz6A01 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.52 37.0 3.84e-01 100.0% 84.0%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.52 40.0 2.69e-01 88.9% 88.9%
1obsA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.52 42.0 3.73e-01 96.3% 85.5%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 38.0 3.82e-01 94.4% 78.9%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 40.0 3.74e-01 85.2% 97.0%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.51 45.0 4.09e-01 100.0% 78.1%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.14e-01 96.3% 92.7%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 38.0 3.76e-01 83.3% 89.8%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.51 41.0 2.58e-01 100.0% 60.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 44.0 4.08e-01 96.3% 76.5%
3oxhA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 37.0 2.92e-01 88.9% 36.8%
2qetA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.50 40.0 3.67e-01 96.3% 85.2%
2zr1A02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.50 39.0 3.51e-01 90.7% 85.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.73 60.0 5.76e-01 100.0% 80.0%
3884907 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.74e-01 87.0% 91.7%
3489512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.77e-01 92.6% 95.0%
428210 3243.1.1.1 ↗ alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.58 48.0 3.25e-01 98.1% 33.2%
3746876 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.58 47.0 4.60e-01 90.7% 91.7%
5076062 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.58 41.0 4.11e-01 88.9% 74.5%
3536595 2004.1.1.413 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 0.58 47.0 3.58e-01 90.7% 43.8%
4938888 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.56 47.0 3.79e-01 100.0% 76.7%
3942661 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.56 48.0 3.44e-01 94.4% 75.5%
5048696 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 3.35e-01 98.1% 49.4%
5004414 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 41.0 3.32e-01 83.3% 95.7%
5082629 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.55 41.0 3.23e-01 85.2% 80.8%
3563220 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.55 46.0 4.10e-01 96.3% 90.0%
5048707 2003.2.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 0.55 40.0 2.66e-01 81.5% 90.8%
4432712 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 43.0 4.00e-01 88.9% 91.4%
5031165 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.54 44.0 4.11e-01 92.6% 82.9%
3761318 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.53 44.0 4.11e-01 94.4% 85.7%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.53 42.0 3.57e-01 90.7% 54.7%
4937178 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 42.0 4.04e-01 100.0% 78.5%
3839972 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 42.0 3.87e-01 100.0% 68.0%
4890012 2484.1.1.209 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › IN_DBD_C 0.52 39.0 2.96e-01 83.3% 33.6%
4362720 2.1.1.48 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.52 36.0 3.58e-01 87.0% 69.0%
3199081 620.1.1.4 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 0.52 43.0 3.18e-01 100.0% 79.4%
3576046 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 34.0 3.56e-01 88.9% 76.0%
4056487 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 41.0 3.88e-01 100.0% 72.9%
3946659 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 42.0 3.98e-01 100.0% 78.5%
4936253 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 41.0 3.86e-01 100.0% 72.9%
5040230 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 41.0 3.94e-01 100.0% 78.5%
3969558 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.51 38.0 2.95e-01 88.9% 34.1%
4996190 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 38.0 3.01e-01 88.9% 36.8%
3973043 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.89e-01 100.0% 78.5%
3185618 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 36.0 2.14e-01 81.5% 9.9%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 40.0 3.89e-01 100.0% 80.0%
4968248 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 40.0 3.79e-01 100.0% 72.9%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 41.0 3.87e-01 100.0% 74.3%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 40.0 3.81e-01 100.0% 74.3%
5036647 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 40.0 3.75e-01 100.0% 72.9%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 41.0 3.95e-01 100.0% 80.0%
3839083 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 40.0 3.75e-01 100.0% 72.9%