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MT104122.1__QIG62576.1__X__00062

Bact-Vir

MT104122.1__QIG62576.1__X__00062

Identity

Accession:
MT104122 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sporosarcina_phage_Lietuvens

TaxID: 2713145

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00241__D2-70
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 42.0 3.96e-01 100.0% 56.3%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 42.0 4.01e-01 98.8% 60.0%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 46.0 4.38e-01 98.8% 70.7%
1iicA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 42.0 3.03e-01 76.5% 58.5%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 42.0 3.90e-01 100.0% 61.0%
4omfA00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.56 48.0 3.16e-01 96.5% 69.1%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.56 40.0 4.29e-01 98.8% 85.3%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.56 45.0 3.76e-01 97.6% 51.0%
5jr6A02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.56 48.0 4.01e-01 98.8% 80.1%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 40.0 3.69e-01 98.8% 58.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 35.0 3.87e-01 90.6% 84.8%
6uf3A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.54 45.0 3.28e-01 94.1% 70.5%
1nyrA03 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 42.0 2.94e-01 87.1% 38.3%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.53 37.0 3.19e-01 81.2% 43.9%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.53 47.0 3.48e-01 100.0% 74.4%
3zeuB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 47.0 3.74e-01 100.0% 64.0%
1bu6O01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 48.0 3.37e-01 100.0% 96.0%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 33.0 2.39e-01 71.8% 20.8%
2xxpA02 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.52 43.0 3.06e-01 92.9% 66.5%
3l0qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 48.0 3.07e-01 100.0% 78.0%
2ivnA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 47.0 3.73e-01 100.0% 63.1%
1huxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 44.0 3.92e-01 100.0% 66.4%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.98e-01 100.0% 75.3%
3hz6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 47.0 3.30e-01 100.0% 95.2%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 47.0 3.31e-01 100.0% 96.7%
4ka7A01 1.10.1370.40 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.51 41.0 2.71e-01 92.9% 54.8%
2yhwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 47.0 3.85e-01 100.0% 75.9%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.50 46.0 3.27e-01 100.0% 81.9%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1187920 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 46.0 5.05e-01 97.6% 95.7%
2629619 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.61 49.0 4.94e-01 100.0% 84.5%
4183381 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.61 44.0 4.19e-01 98.8% 64.0%
3948565 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.61 44.0 4.10e-01 98.8% 61.0%
1949795 2484.1.1.11 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.58 45.0 4.35e-01 96.5% 74.5%
3611339 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 35.0 3.56e-01 84.7% 62.4%
3626807 2484.1.1.65 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.57 50.0 3.49e-01 100.0% 70.4%
4033690 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.56 44.0 4.05e-01 100.0% 64.5%
3413023 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 3.66e-01 95.3% 50.0%
3542721 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 40.0 3.66e-01 77.6% 64.2%
2756654 2484.1.1.11 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.55 44.0 3.70e-01 97.6% 50.7%
5083421 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.55 46.0 4.58e-01 98.8% 85.6%
3969734 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.55 51.0 3.55e-01 100.0% 96.8%
3830643 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.54 42.0 4.19e-01 97.6% 78.9%
3246974 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 41.0 3.92e-01 87.1% 69.0%
5030386 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.54 50.0 3.96e-01 100.0% 63.6%
3971326 7503.1.1.2 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › ABC_trans_aux 0.54 43.0 3.46e-01 88.2% 85.1%
3302384 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.54 49.0 4.03e-01 100.0% 72.0%
5026711 2484.7.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Uncharacterized protein PF2046 › Uncharacterized protein PF2046 › DUF4152 0.53 48.0 3.53e-01 100.0% 74.2%
4945446 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.53 48.0 4.01e-01 100.0% 74.5%
5077181 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.53 49.0 3.52e-01 100.0% 96.5%
3337433 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 40.0 4.15e-01 97.6% 87.5%
3947610 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.53 49.0 3.42e-01 100.0% 96.0%
4953417 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.52 35.0 3.78e-01 91.8% 82.9%
3589523 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.52 49.0 3.40e-01 100.0% 94.8%
3290713 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.52 49.0 3.87e-01 100.0% 70.0%
3924494 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.52 41.0 3.76e-01 97.6% 63.5%
4980477 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 47.0 4.03e-01 100.0% 79.3%
5074297 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.52 48.0 3.37e-01 100.0% 97.6%
3278013 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.52 48.0 4.09e-01 100.0% 84.6%
3490365 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 42.0 4.13e-01 100.0% 82.2%
3317463 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 46.0 3.89e-01 100.0% 90.3%
5068822 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.52 44.0 4.28e-01 100.0% 83.2%
4494959 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 38.0 3.20e-01 76.5% 66.4%
3810495 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 39.0 3.78e-01 97.6% 71.0%
3513186 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 34.0 3.36e-01 84.7% 65.6%
3835155 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.50 46.0 3.26e-01 100.0% 91.4%
3624820 2484.1.1.65 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.50 43.0 3.01e-01 100.0% 63.2%
3577888 2484.1.1.65 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.50 44.0 3.15e-01 100.0% 80.0%
3957119 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 46.0 3.46e-01 100.0% 68.8%
3819047 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 45.0 3.81e-01 100.0% 93.6%