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MT104470.1__QJD54916.1__PssvBMR7_gp29__00029

Bact-Vir

MT104470.1__QJD54916.1__PssvBMR7_gp29__00029

Identity

Accession:
MT104470 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-43
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 28.4 1.40e-06 85.7% 63.0%
D2 medium residues 49-101
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 52.0 5.57e-01 100.0% 82.2%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 52.0 5.17e-01 84.9% 70.4%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 51.0 5.63e-01 83.0% 92.7%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 48.0 4.71e-01 81.1% 62.1%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 4.25e-01 81.1% 46.3%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 49.0 4.86e-01 98.1% 69.6%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 51.0 5.29e-01 98.1% 85.4%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 4.81e-01 81.1% 69.1%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 5.39e-01 96.2% 74.2%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 45.0 5.14e-01 83.0% 92.3%
1znnA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 59.0 3.77e-01 94.3% 30.6%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 50.0 5.26e-01 100.0% 89.4%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 55.0 5.52e-01 100.0% 85.5%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 47.0 5.01e-01 84.9% 88.6%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.32e-01 81.1% 58.7%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 52.0 4.86e-01 90.6% 66.2%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 3.77e-01 83.0% 41.6%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.83e-01 100.0% 67.2%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 3.62e-01 100.0% 36.5%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.28e-01 81.1% 59.4%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.81e-01 100.0% 78.0%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 55.0 4.35e-01 100.0% 46.2%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.41e-01 100.0% 63.5%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.48e-01 100.0% 66.1%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 3.23e-01 83.0% 27.0%
2j5oA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 4.15e-01 100.0% 58.5%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 47.0 4.76e-01 100.0% 79.6%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 47.0 4.28e-01 88.7% 57.7%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.31e-01 100.0% 63.5%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.39e-01 88.7% 60.6%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.29e-01 100.0% 62.1%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 3.81e-01 100.0% 48.7%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.31e-01 100.0% 62.7%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.65e-01 88.7% 69.2%
4ch7A01 1.10.10.2890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 45.0 3.51e-01 81.1% 35.3%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.06e-01 88.7% 50.6%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.25e-01 100.0% 65.1%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 47.0 3.89e-01 100.0% 46.8%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 53.0 3.98e-01 98.1% 73.7%
1xwyA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.61 47.0 3.01e-01 84.9% 22.7%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.03e-01 100.0% 59.4%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.60 46.0 4.10e-01 100.0% 57.9%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 53.0 4.03e-01 98.1% 77.5%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 49.0 4.64e-01 100.0% 76.5%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.54e-01 84.9% 47.2%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.05e-01 100.0% 63.4%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.07e-01 98.1% 61.5%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.43e-01 100.0% 45.7%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.12e-01 98.1% 65.8%
3oo2A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.55 41.0 2.97e-01 81.1% 56.0%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.87e-01 96.2% 96.2%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 3.23e-01 98.1% 33.8%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 47.0 4.33e-01 100.0% 93.9%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.03e-01 83.0% 40.8%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.72e-01 98.1% 84.3%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 36.0 3.40e-01 77.4% 87.0%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.55e-01 96.2% 85.4%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.52e-01 88.7% 65.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5024511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 60.0 6.23e-01 90.6% 82.0%
4258153 101.1.1.43 alpha arrays › HTH › HTH › Three-helical HTH › Mor 0.80 57.0 5.67e-01 100.0% 72.7%
4201722 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.79 56.0 6.22e-01 88.7% 100.0%
3970951 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 57.0 5.86e-01 92.5% 82.0%
3546741 101.1.1.96 alpha arrays › HTH › HTH › Three-helical HTH › Neugrin 0.78 61.0 4.84e-01 90.6% 44.0%
4627768 101.1.2.786 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_1 0.74 51.0 5.66e-01 84.9% 97.5%
3968008 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 49.0 5.09e-01 81.1% 74.0%
3908710 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 4.96e-01 100.0% 50.5%
3444766 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.73 60.0 4.90e-01 100.0% 50.5%
3442515 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.73 61.0 5.30e-01 92.5% 61.3%
3455559 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 4.89e-01 100.0% 50.5%
3670763 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 56.0 6.04e-01 81.1% 95.6%
3257506 101.1.1.333 alpha arrays › HTH › HTH › Three-helical HTH › ATG29_N 0.71 56.0 5.08e-01 92.5% 62.7%
3452698 101.1.10.37 alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.71 53.0 4.41e-01 100.0% 45.3%
2556 101.1.1.43 alpha arrays › HTH › HTH › Three-helical HTH › Mor 0.70 51.0 5.29e-01 98.1% 85.4%
4604979 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.70 56.0 4.40e-01 92.5% 43.3%
3177199 3541.1.1.2 beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG29_N 0.70 61.0 5.04e-01 98.1% 75.8%
3786594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 52.0 4.35e-01 100.0% 46.7%
3880943 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 57.0 4.70e-01 100.0% 50.5%
3445817 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.70 53.0 5.58e-01 83.0% 100.0%
3302248 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 58.0 6.00e-01 90.6% 96.0%
4574919 2002.1.1.71 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SOR_SNZ 0.69 60.0 3.67e-01 94.3% 26.3%
4947595 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 4.34e-01 100.0% 53.3%
3929142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 4.96e-01 100.0% 71.7%
3727217 101.1.2.384 alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 0.68 49.0 5.05e-01 98.1% 82.0%
3707222 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 5.51e-01 90.6% 87.3%
2842 101.1.10.10 alpha arrays › HTH › HTH › Cyclin-like › K-cyclin_vir_C 0.67 52.0 4.16e-01 83.0% 43.6%
3889955 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.67 53.0 5.30e-01 100.0% 85.5%
5038523 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.66 50.0 4.66e-01 100.0% 66.2%
1320273 101.1.10.11 alpha arrays › HTH › HTH › Cyclin-like › Herp-Cyclin 0.65 55.0 4.30e-01 100.0% 45.0%
2464 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 50.0 4.57e-01 90.6% 63.9%
3507783 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 50.0 4.84e-01 94.3% 86.7%
3978748 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.61 47.0 3.98e-01 98.1% 51.8%
3962667 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.49e-01 100.0% 78.2%
4930909 101.29.1.0 alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like 0.60 47.0 4.72e-01 92.5% 87.3%
5027754 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 47.0 4.84e-01 86.8% 90.0%
5040366 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 48.0 4.58e-01 100.0% 76.7%
5018159 101.29.1.1 alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like › DUF790 0.59 48.0 4.92e-01 100.0% 98.0%
3812195 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.59 50.0 3.98e-01 94.3% 48.6%
5036922 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.59 44.0 3.31e-01 81.1% 33.1%
5025032 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.59 45.0 4.66e-01 98.1% 96.0%
3414098 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.80e-01 84.9% 54.1%
4977009 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 4.26e-01 92.5% 78.5%
3208574 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 43.0 2.55e-01 84.9% 10.5%
3398009 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.57 48.0 4.11e-01 98.1% 68.9%
5034713 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.73e-01 92.5% 81.0%
4944438 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 44.0 3.81e-01 94.3% 53.7%
5031872 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.30e-01 92.5% 85.0%
3728726 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.54 44.0 4.06e-01 96.2% 69.3%
3241028 101.1.2.649 alpha arrays › HTH › HTH › winged helix domain › PF28730 0.54 47.0 4.07e-01 100.0% 63.5%
3291136 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.53 42.0 3.22e-01 96.2% 52.0%
5044828 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 3.83e-01 100.0% 63.3%
3832359 101.1.2.97 alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.51 43.0 3.87e-01 94.3% 68.9%
5028179 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 44.0 3.55e-01 98.1% 81.0%
4046332 101.1.2.81 alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.50 42.0 3.75e-01 100.0% 88.7%
3964735 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.50 38.0 2.36e-01 92.5% 74.3%