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MT104474.1__QJD55173.1__Psm1vBMR14_gp21__00021
Bact-VirMT104474.1__QJD55173.1__Psm1vBMR14_gp21__00021
Identity
- Accession:
- MT104474 ↗
- Kingdom:
- phage
Quality
80.7
mean pLDDT
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-110
Domain cluster:
rep: OP296522.1__UYD72065.1__VG_p17__00017__D58-122
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2im9A02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.81 | 69.0 | 5.62e-01 | 92.7% | 99.3% |
| 2p1gA02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.77 | 57.0 | 5.33e-01 | 78.0% | 100.0% |
| 3kw0A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.74 | 59.0 | 4.46e-01 | 85.4% | 51.9% |
| 2evrA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.69 | 63.0 | 5.15e-01 | 100.0% | 73.6% |
| 4innA00 | 2.40.128.520 | Mainly Beta › Beta Barrel › Lipocalin › | 0.66 | 46.0 | 3.81e-01 | 73.2% | 84.2% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 55.0 | 4.86e-01 | 100.0% | 96.9% |
| 1zc3B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 43.0 | 3.92e-01 | 70.7% | 78.9% |
| 4bf3A00 | 2.30.31.50 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F | 0.62 | 43.0 | 3.69e-01 | 70.7% | 95.5% |
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 36.0 | 4.34e-01 | 70.7% | 100.0% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 39.0 | 3.50e-01 | 70.7% | 80.3% |
| 2kuqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 42.0 | 3.41e-01 | 78.0% | 52.3% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.56 | 38.0 | 3.42e-01 | 70.7% | 78.2% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 39.0 | 3.37e-01 | 73.2% | 98.5% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 39.0 | 3.10e-01 | 74.4% | 85.8% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 35.0 | 4.08e-01 | 70.7% | 94.6% |
| 2kdsA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 3.77e-01 | 74.4% | 68.6% |
| 1irxA02 | 2.30.30.300 | Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like | 0.54 | 29.0 | 3.79e-01 | 70.7% | 100.0% |
| 1mdcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 37.0 | 3.27e-01 | 70.7% | 100.0% |
| 3fssA01 | 2.30.29.120 | Mainly Beta › Roll › PH-domain like › | 0.54 | 37.0 | 3.19e-01 | 70.7% | 74.3% |
| 3cp7A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 38.0 | 3.45e-01 | 74.4% | 96.4% |
| 1h91A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 38.0 | 3.03e-01 | 75.6% | 65.6% |
| 1f39A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.53 | 45.0 | 4.22e-01 | 93.9% | 84.2% |
| 8ornD01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 39.0 | 3.13e-01 | 79.3% | 87.5% |
| 2nr4A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 36.0 | 3.14e-01 | 74.4% | 44.4% |
| 3k2zA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.52 | 43.0 | 3.87e-01 | 93.9% | 65.5% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.52 | 42.0 | 3.74e-01 | 90.2% | 63.6% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 32.0 | 3.83e-01 | 80.5% | 100.0% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 35.0 | 3.73e-01 | 72.0% | 84.3% |
| 3mepA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 3.35e-01 | 93.9% | 91.6% |
| 2qlvB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 32.0 | 3.16e-01 | 73.2% | 58.6% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3983510 | 219.1.1.152 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF26124 | 0.68 | 61.0 | 4.89e-01 | 100.0% | 88.5% |
| 5042888 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 44.0 | 2.70e-01 | 73.2% | 88.7% |
| 4994580 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 45.0 | 2.78e-01 | 74.4% | 85.9% |
| 5045206 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.62 | 43.0 | 2.65e-01 | 72.0% | 84.3% |
| 4473115 | 4.1.1.5 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L14e | 0.59 | 39.0 | 3.68e-01 | 76.8% | 56.0% |
| 3164898 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.59 | 47.0 | 4.58e-01 | 90.2% | 84.2% |
| 3404654 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 40.0 | 3.29e-01 | 70.7% | 69.7% |
| 2831843 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 38.0 | 3.56e-01 | 74.4% | 52.9% |
| 3706998 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 38.0 | 4.28e-01 | 73.2% | 93.3% |
| 5029261 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.56 | 51.0 | 4.15e-01 | 100.0% | 74.0% |
| 3491787 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 38.0 | 2.89e-01 | 70.7% | 65.2% |
| 4659299 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 35.0 | 3.92e-01 | 73.2% | 86.7% |
| 3502290 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 36.0 | 4.08e-01 | 73.2% | 91.7% |
| 3601563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 38.0 | 3.22e-01 | 73.2% | 84.7% |
| 3680934 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 28.0 | 3.54e-01 | 81.7% | 90.0% |
| 4075150 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.53 | 44.0 | 3.43e-01 | 93.9% | 41.0% |
| 3907619 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.53 | 42.0 | 4.20e-01 | 100.0% | 87.1% |
| 1263713 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.53 | 33.0 | 3.91e-01 | 70.7% | 100.0% |
| 3540088 | 220.1.1.184 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP | 0.53 | 36.0 | 3.18e-01 | 70.7% | 75.4% |
| 5028087 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.53 | 44.0 | 3.97e-01 | 91.5% | 80.9% |
| 3277860 | 4.1.1.368 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3097_N | 0.53 | 36.0 | 3.96e-01 | 70.7% | 92.3% |
| 5027750 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 32.0 | 3.74e-01 | 92.7% | 90.9% |
| 3926120 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.52 | 46.0 | 3.85e-01 | 100.0% | 77.9% |
| 2710030 | 1.1.5.12 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S39 | 0.52 | 43.0 | 3.31e-01 | 91.5% | 51.3% |
| 5002093 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 38.0 | 3.22e-01 | 79.3% | 75.3% |
| 3535268 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.52 | 41.0 | 3.99e-01 | 100.0% | 76.8% |
| 3579992 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 35.0 | 2.95e-01 | 70.7% | 53.5% |
| 3508415 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.52 | 41.0 | 3.64e-01 | 100.0% | 57.7% |
| 4259069 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.30e-01 | 95.1% | 40.5% |
| 3546306 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.51 | 42.0 | 4.02e-01 | 90.2% | 80.0% |
| 3973676 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.51 | 42.0 | 3.76e-01 | 93.9% | 92.7% |
| 4447540 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.51 | 42.0 | 3.59e-01 | 93.9% | 78.6% |
| 3536576 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.51 | 41.0 | 4.07e-01 | 89.0% | 85.9% |
| 3509392 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 37.0 | 3.09e-01 | 79.3% | 73.1% |
| 4034335 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.51 | 43.0 | 3.98e-01 | 97.6% | 95.5% |
| 4406602 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.51 | 42.0 | 3.64e-01 | 95.1% | 87.7% |
| 4930482 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.51 | 35.0 | 3.13e-01 | 73.2% | 48.0% |
| 5002677 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 38.0 | 3.22e-01 | 80.5% | 75.2% |
| 3864477 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 35.0 | 2.88e-01 | 72.0% | 53.3% |
| 3913687 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.51 | 40.0 | 3.96e-01 | 100.0% | 81.1% |
| 4218142 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.51 | 34.0 | 3.23e-01 | 76.8% | 57.0% |
| 4331428 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.50 | 42.0 | 3.60e-01 | 96.3% | 82.9% |