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MT104474.1__QJD55211.1__Psm1vBMR14_gp60__00060

Bact-Vir

MT104474.1__QJD55211.1__Psm1vBMR14_gp60__00060

Identity

Accession:
MT104474 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_MR14

TaxID: 2711178

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-168
PDB
Domain cluster: rep: MT764211__UXF49893.1__7841G3A1-29__00029__D10-194
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09250.17 best Prim-Pol 121.8 5.10e-35 96.3% 94.3%
D2 high residues 185-272
PDB
Domain cluster: rep: GU169904.1__ACZ55506.1__X__00009__D231-302
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08707.17 best PriCT_2 40.2 5.00e-10 89.8% 96.1%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m3mA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 47.0 4.29e-01 77.3% 87.1%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.63 51.0 4.24e-01 89.8% 86.8%
1yuzB01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 48.0 4.13e-01 81.8% 67.4%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.62 46.0 4.43e-01 77.3% 77.8%
1udyA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.62 48.0 4.40e-01 86.4% 93.3%
1sz9C00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 45.0 3.95e-01 79.5% 52.9%
3n71A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 43.0 3.34e-01 75.0% 32.9%
5mdtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 44.0 3.79e-01 79.5% 49.3%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.60 46.0 4.23e-01 80.7% 76.1%
3zc0D00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 46.0 3.64e-01 83.0% 42.2%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.59 43.0 4.40e-01 78.4% 95.2%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.59 47.0 3.94e-01 89.8% 78.2%
3nb2A04 1.10.4140.10 Mainly Alpha › Orthogonal Bundle › effector protein (NleL) fold › effector protein (NleL) 0.59 46.0 3.73e-01 86.4% 78.5%
4j8sA00 1.25.40.840 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain 0.58 42.0 3.42e-01 77.3% 40.6%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.57 38.0 3.95e-01 72.7% 74.7%
3bqoA00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.57 49.0 3.86e-01 100.0% 52.0%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 40.0 3.83e-01 76.1% 91.7%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.71e-01 79.5% 72.9%
5um2A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 43.0 3.61e-01 93.2% 74.4%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.52 41.0 4.08e-01 90.9% 91.8%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.51 36.0 3.26e-01 100.0% 52.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003619 4973.1.1.0 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.73 51.0 5.83e-01 72.7% 100.0%
5021512 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 46.0 3.84e-01 70.5% 38.7%
3484674 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 51.0 4.17e-01 80.7% 98.8%
5020266 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 46.0 4.55e-01 72.7% 74.7%
5054621 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.65 57.0 5.12e-01 98.9% 75.2%
4125648 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.64 48.0 3.43e-01 80.7% 45.5%
3993557 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 46.0 3.53e-01 76.1% 37.1%
5028132 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.63 51.0 5.33e-01 92.0% 100.0%
3701650 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 43.0 3.81e-01 70.5% 60.8%
3899877 109.4.1.451 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.60 43.0 2.95e-01 76.1% 63.0%
4960240 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 42.0 2.91e-01 76.1% 21.3%
4967916 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 41.0 3.33e-01 76.1% 43.2%
3308126 207.1.1.289 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › NB-ARC 0.57 46.0 2.81e-01 89.8% 27.8%
5034431 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.56 43.0 3.77e-01 84.1% 72.9%
3353628 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.55 44.0 3.24e-01 89.8% 66.4%
3813504 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 36.0 3.61e-01 77.3% 62.1%
4683234 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.55 37.0 3.77e-01 70.5% 93.3%
3931621 109.4.1.77 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AAR2 0.55 39.0 3.34e-01 77.3% 50.0%
4011257 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 44.0 3.37e-01 87.5% 59.0%
3465392 109.4.1.2573 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mon2_C, DCB 0.54 46.0 2.73e-01 97.7% 35.3%
5025665 7516.1.1.51 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_21 0.53 45.0 3.08e-01 95.5% 47.1%
D3 high residues 326-412
PDB
Domain cluster: rep: MH834603.1__AYN57327.1__PBI_BRIDGETTE_61__00061__D383-477
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.62 37.0 4.21e-01 80.5% 82.3%
6ofuA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 42.0 3.06e-01 77.0% 91.9%
6o15A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 36.0 2.70e-01 97.7% 25.8%
1e29A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.53 44.0 3.89e-01 94.3% 74.1%
2i9dA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 42.0 3.27e-01 95.4% 75.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954609 101.1.2.749 ↗ alpha arrays › HTH › HTH › winged helix domain › D5_N 0.85 81.0 7.86e-01 100.0% 96.8%
5022019 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 58.0 6.04e-01 97.7% 91.3%
3786350 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.59 49.0 4.68e-01 96.6% 79.0%
5082662 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.55 43.0 3.23e-01 82.8% 39.0%
5007460 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.54 44.0 3.21e-01 94.3% 81.8%
4991542 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.54 44.0 3.20e-01 94.3% 79.3%
5015560 10.28.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.53 41.0 3.71e-01 98.9% 60.0%
3314927 7064.1.1.5 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › ALMT 0.51 44.0 3.66e-01 100.0% 80.6%
4977732 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.50 38.0 2.88e-01 82.8% 57.8%
D4 high residues 468-669
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19263.6 best DUF5906 48.9 1.40e-12 56.9% 99.1%
D5 high residues 677-744
PDB
Domain cluster: rep: IMGVR_UViG_3300033781_000034-3300033781-Ga0326759_00004_125332_128028__D740-834
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 78.0 7.54e-01 100.0% 93.4%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.72 62.0 5.95e-01 97.1% 90.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 4.80e-01 97.1% 58.0%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 5.23e-01 97.1% 70.9%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.35e-01 97.1% 82.4%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 5.00e-01 97.1% 71.8%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.58e-01 97.1% 59.2%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 56.0 4.61e-01 97.1% 74.0%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.87e-01 94.1% 71.4%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 5.39e-01 97.1% 85.3%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 5.03e-01 97.1% 75.0%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.00e-01 97.1% 42.6%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.09e-01 97.1% 92.2%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.08e-01 97.1% 43.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.69e-01 97.1% 61.9%
3l4gC03 1.10.10.2330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 46.0 5.04e-01 97.1% 100.0%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.59e-01 97.1% 71.8%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.63 53.0 4.31e-01 97.1% 50.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 3.81e-01 97.1% 37.9%
1l1lA03 3.90.1390.10 Alpha Beta › Alpha-Beta Complex › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 0.63 38.0 3.44e-01 86.8% 43.6%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.18e-01 97.1% 58.1%
3cuqC01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.62 53.0 4.72e-01 98.5% 67.3%
5idmA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.62 43.0 3.21e-01 73.5% 95.5%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.41e-01 97.1% 58.8%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.42e-01 97.1% 60.4%
4anjA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 48.0 4.08e-01 86.8% 59.3%
2ly1A03 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.61 49.0 4.65e-01 97.1% 76.5%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.73e-01 97.1% 78.3%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.28e-01 97.1% 60.0%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.83e-01 97.1% 92.3%
1k78B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.39e-01 97.1% 77.5%
3lapA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.55e-01 97.1% 89.7%
1jg5A00 3.30.1410.10 Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP 0.56 43.0 4.03e-01 80.9% 100.0%
1xb4B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.43e-01 97.1% 84.0%
4ig1A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.56 44.0 2.88e-01 88.2% 74.7%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 4.13e-01 97.1% 77.8%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.20e-01 98.5% 76.2%
1gkxA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 40.0 3.06e-01 77.9% 94.0%
3mczA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 3.14e-01 95.6% 32.5%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.54 41.0 2.73e-01 82.4% 52.4%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.54 42.0 3.82e-01 100.0% 63.4%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 4.41e-01 97.1% 96.9%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 39.0 4.02e-01 95.6% 85.1%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.08e-01 89.7% 31.1%
4ammA00 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.52 37.0 2.34e-01 76.5% 14.6%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.52 36.0 3.56e-01 89.7% 67.1%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.52 37.0 3.58e-01 89.7% 66.7%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.52 38.0 3.70e-01 88.2% 70.1%
2dulA02 3.30.56.70 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain 0.51 35.0 3.70e-01 83.8% 84.7%
4i68A00 3.30.70.1800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.68e-01 86.8% 76.7%
4hv0C00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.50 38.0 3.51e-01 82.4% 95.5%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.91 86.0 8.28e-01 100.0% 94.7%
5022021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.91 85.0 6.99e-01 100.0% 65.2%
4973290 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.91 83.0 8.25e-01 100.0% 94.3%
5003621 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.90 84.0 7.42e-01 100.0% 74.7%
3954610 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.88 81.0 7.81e-01 100.0% 89.3%
5029778 101.1.2.43 ↗ alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.88 81.0 7.32e-01 100.0% 82.2%
3688358 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.88 80.0 7.56e-01 98.5% 86.3%
3883278 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.87 80.0 7.07e-01 100.0% 74.7%
3537242 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.85 77.0 6.69e-01 100.0% 72.0%
3177239 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.84 77.0 6.04e-01 100.0% 52.6%
4012878 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 76.0 6.31e-01 100.0% 60.9%
3689786 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 76.0 5.54e-01 100.0% 40.0%
3898745 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.81 72.0 6.46e-01 100.0% 78.9%
5052010 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 5.92e-01 97.1% 80.0%
5045315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 62.0 5.22e-01 97.1% 60.9%
4026719 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 4.93e-01 97.1% 53.6%
3598367 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.17e-01 97.1% 66.7%
3785070 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 57.0 4.96e-01 97.1% 59.6%
3497764 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 57.0 5.23e-01 97.1% 69.7%
3598997 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 57.0 5.30e-01 97.1% 72.9%
3927474 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 57.0 5.22e-01 97.1% 69.7%
5045522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 3.88e-01 97.1% 25.7%
3479827 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.21e-01 97.1% 70.5%
4337010 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 52.0 4.90e-01 80.9% 78.8%
3576823 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.68 56.0 4.56e-01 97.1% 48.1%
3176995 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.68 56.0 5.21e-01 97.1% 73.8%
3503213 101.1.2.74 ↗ alpha arrays › HTH › HTH › winged helix domain › Cnd2 0.68 58.0 5.22e-01 95.6% 88.3%
5073785 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.67 58.0 5.06e-01 97.1% 65.7%
4977903 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 5.56e-01 97.1% 86.3%
3355197 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 60.0 5.28e-01 100.0% 94.0%
4946048 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.37e-01 97.1% 81.2%
3713829 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.67 54.0 4.79e-01 97.1% 60.2%
3481449 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.67 58.0 4.26e-01 97.1% 43.9%
3568884 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.67 58.0 4.35e-01 97.1% 41.2%
3550061 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.67 54.0 4.75e-01 97.1% 59.0%
3829946 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.66 57.0 4.33e-01 95.6% 55.0%
3598643 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 5.29e-01 97.1% 85.7%
4996559 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 5.67e-01 98.5% 90.7%
4971686 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 54.0 4.73e-01 97.1% 61.0%
5001284 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 55.0 4.23e-01 97.1% 43.1%
3744213 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.65 55.0 4.42e-01 97.1% 47.1%
3281621 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.65 44.0 4.74e-01 86.8% 89.1%
4978424 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 53.0 4.49e-01 97.1% 54.2%
5000571 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 52.0 4.98e-01 97.1% 78.8%
3979431 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 51.0 4.05e-01 97.1% 42.0%
3781009 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 3.61e-01 97.1% 24.0%
5076211 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.65e-01 98.5% 69.1%
3257174 101.1.2.148 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.62 54.0 4.44e-01 100.0% 92.3%
3695776 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.62 44.0 3.21e-01 76.5% 95.5%
5049162 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 49.0 3.79e-01 97.1% 37.1%
4947503 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 3.96e-01 97.1% 41.2%
4979997 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 49.0 3.99e-01 97.1% 45.0%
4229465 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.62e-01 97.1% 77.5%
4994340 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 52.0 4.19e-01 100.0% 94.3%
5024398 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 47.0 3.97e-01 97.1% 47.7%
3690405 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.60 47.0 4.35e-01 86.8% 66.7%
3786852 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.60 50.0 4.70e-01 97.1% 78.8%
4947881 101.1.9.153 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › tRNA_synthFbeta 0.59 46.0 4.35e-01 85.3% 69.4%
3960412 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.84e-01 97.1% 45.0%
5046626 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 47.0 3.70e-01 97.1% 40.0%
3951258 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 47.0 3.77e-01 97.1% 42.0%
4990701 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 47.0 3.96e-01 97.1% 49.2%
4138721 101.1.9.20 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.58 46.0 4.50e-01 88.2% 81.3%
5031662 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 49.0 4.14e-01 100.0% 86.4%
4983405 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 47.0 3.67e-01 97.1% 39.9%
4408011 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.56 41.0 4.21e-01 85.3% 83.1%
3967843 101.1.9.44 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PyocinActivator 0.55 46.0 4.51e-01 92.6% 84.0%
3860881 11.1.1.365 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP1_ZP4_Ig-like 0.55 42.0 3.74e-01 88.2% 68.2%
4654074 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.53 38.0 3.45e-01 88.2% 56.7%
5041638 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.51 42.0 3.97e-01 95.6% 78.8%
5061359 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.50 42.0 2.73e-01 95.6% 38.8%
5070420 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.50 43.0 3.38e-01 94.1% 73.6%
D6 medium residues 413-467
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08706.17 best D5_N 36.4 8.70e-09 100.0% 38.1%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eslA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 40.0 3.00e-01 83.6% 84.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4973289 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.91 84.0 5.23e-01 100.0% 21.1%
3954608 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.86 75.0 4.75e-01 96.4% 20.8%
5022020 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.84 69.0 4.37e-01 90.9% 19.6%
5081314 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.84 71.0 4.50e-01 94.5% 20.4%
5035042 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.83 72.0 4.55e-01 100.0% 19.6%
5029777 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.79 63.0 4.05e-01 89.1% 20.0%
3945876 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.77 68.0 4.33e-01 100.0% 23.4%