←Back to structures

MT118296.1__QIQ65294.1__19_00001__00001

Bact-Vir

MT118296.1__QIQ65294.1__19_00001__00001

Identity

Accession:
MT118296 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesyanzhinovviridae› Pseudomonas_phage_Epa19

TaxID: 2719189

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-49
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.96 78.0 7.80e-01 85.1% 85.1%
2ahmG01 6.10.250.2820 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.85 66.0 5.12e-01 85.1% 40.4%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 73.0 4.84e-01 100.0% 33.3%
5ab0C04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.81 69.0 4.09e-01 100.0% 13.8%
2fefA01 1.20.1440.70 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like 0.81 73.0 5.27e-01 100.0% 82.4%
2qvaA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.80 62.0 5.96e-01 85.1% 77.4%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.79 68.0 5.12e-01 100.0% 87.2%
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.78 68.0 5.14e-01 100.0% 77.4%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 67.0 4.32e-01 100.0% 43.2%
3sllA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.73 53.0 4.94e-01 80.9% 63.9%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.72 54.0 3.95e-01 83.0% 41.2%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.71 65.0 4.29e-01 100.0% 52.6%
2yfkA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.70 52.0 3.50e-01 85.1% 40.8%
1v0dA01 6.10.140.170 Special › Helix non-globular › Helix Hairpins › 0.69 55.0 5.50e-01 95.7% 87.8%
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.68 42.0 4.06e-01 70.2% 52.7%
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.67 57.0 3.55e-01 97.9% 18.9%
3onqA01 1.20.5.5100 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 51.0 5.37e-01 87.2% 95.2%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.65 53.0 4.22e-01 100.0% 45.0%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 55.0 4.06e-01 100.0% 83.2%
1dd3A01 1.20.5.710 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin 0.65 51.0 4.92e-01 97.9% 75.4%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 56.0 4.21e-01 100.0% 55.3%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 47.0 4.28e-01 83.0% 90.8%
2ifaB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.61 48.0 3.13e-01 85.1% 61.2%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.59 47.0 3.95e-01 87.2% 81.5%
1dd9A03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.57 44.0 4.29e-01 97.9% 84.7%
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.57 36.0 3.73e-01 100.0% 67.4%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.56 47.0 4.52e-01 97.9% 91.2%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 40.0 3.21e-01 78.7% 61.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4878100 616.1.1.2 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS 0.90 72.0 7.54e-01 85.1% 95.2%
3396277 192.17.1.12 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › WHEP-TRS 0.90 71.0 6.49e-01 85.1% 66.7%
3618833 2484.8.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.88 69.0 4.27e-01 85.1% 16.7%
5065296 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.84 76.0 6.97e-01 100.0% 96.7%
4601770 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.84 65.0 5.72e-01 85.1% 57.1%
3202378 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.83 77.0 4.30e-01 100.0% 10.7%
3628598 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.81 70.0 5.95e-01 100.0% 82.5%
3849616 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.81 61.0 5.52e-01 83.0% 60.0%
3567672 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.80 61.0 6.46e-01 83.0% 97.5%
4054690 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.80 61.0 6.27e-01 85.1% 95.6%
3618865 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.80 67.0 5.26e-01 95.7% 80.0%
4532371 192.6.1.1 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.79 62.0 6.13e-01 87.2% 88.0%
4485451 192.6.1.9 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › PF27469 0.75 55.0 5.37e-01 85.1% 78.2%
3700988 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.73 63.0 5.37e-01 100.0% 73.8%
3984193 633.16.2.2 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › N-terminal domain of antitoxin HigA › PF29431 0.72 61.0 5.33e-01 100.0% 68.0%
4575627 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.72 57.0 3.90e-01 93.6% 48.1%
3595543 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.70 56.0 4.34e-01 93.6% 47.8%
5060383 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 58.0 5.16e-01 100.0% 89.3%
4179237 6028.1.1.0 ↗ alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.70 57.0 5.29e-01 100.0% 83.1%
3720909 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.69 54.0 3.88e-01 100.0% 27.1%
5059064 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.69 58.0 4.92e-01 100.0% 74.1%
1389183 6161.1.1.1 ↗ a+b two layers › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › DUF5517 0.68 51.0 4.38e-01 89.4% 54.7%
4156713 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.66 51.0 3.57e-01 91.5% 46.5%
3610044 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.64 49.0 3.51e-01 97.9% 50.8%
4023439 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 48.0 4.42e-01 95.7% 78.6%
3256687 568.1.1.0 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related 0.61 44.0 4.64e-01 80.9% 92.5%
3718917 6132.1.1.0 ↗ alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.57 40.0 3.64e-01 80.9% 53.3%