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MT118301.1__QIQ65757.1__33_00005__00005

Bact-Vir

MT118301.1__QIQ65757.1__33_00005__00005

Identity

Accession:
MT118301 ↗
Kingdom:
phage

Quality

55.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hollowayvirus› Pseudomonas_phage_Epa33

TaxID: 2719194

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 473-569
PDB
Domain cluster: rep: MW677529.1__QXN72695.1__RCZAHN_86__00086__D113-235
D2 medium residues 3-113
PDB
D3 medium residues 141-221_236-317
PDB
D4 medium residues 331-385
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.82 59.0 4.76e-01 81.8% 40.4%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.75 51.0 3.34e-01 70.9% 17.9%
1kqpA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.75 63.0 3.94e-01 90.9% 55.4%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.74 51.0 3.46e-01 72.7% 21.0%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.73 49.0 3.14e-01 70.9% 14.9%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.71 55.0 4.66e-01 85.5% 51.1%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.71 56.0 3.94e-01 92.7% 26.8%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.68 47.0 4.52e-01 72.7% 62.5%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.67 42.0 2.88e-01 100.0% 18.4%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.19e-01 94.5% 46.1%
1ihuA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 47.0 3.07e-01 78.2% 18.0%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.64 50.0 3.81e-01 87.3% 55.5%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.64 44.0 3.66e-01 72.7% 44.6%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 42.0 3.85e-01 70.9% 100.0%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.61 50.0 5.07e-01 89.1% 100.0%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.59 44.0 3.93e-01 85.5% 64.7%
3u9rB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.58 44.0 2.90e-01 85.5% 61.6%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.57 36.0 3.45e-01 96.4% 56.2%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.56 40.0 3.45e-01 76.4% 59.8%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 38.0 3.71e-01 74.5% 71.0%
6yiiA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 44.0 3.02e-01 90.9% 83.7%
3bhgA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 41.0 3.41e-01 96.4% 49.6%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.51 36.0 3.60e-01 74.5% 73.2%
4guzA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.51 43.0 3.09e-01 100.0% 58.6%
4iaoA01 1.20.120.1710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 42.0 3.37e-01 100.0% 46.5%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4059608 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.91 62.0 3.78e-01 70.9% 14.4%
3350634 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.89 61.0 3.76e-01 70.9% 15.2%
5000806 251.1.1.1 ↗ a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS 0.87 78.0 6.01e-01 98.2% 47.0%
3807993 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.87 59.0 3.65e-01 70.9% 14.9%
3690556 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.82 58.0 5.70e-01 74.5% 68.3%
4562263 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.82 57.0 3.47e-01 72.7% 13.5%
3963537 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.80 54.0 3.35e-01 70.9% 13.7%
4208499 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.80 55.0 3.41e-01 72.7% 13.5%
5039658 2003.1.1.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.79 55.0 3.78e-01 72.7% 23.1%
3989035 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.79 55.0 4.58e-01 80.0% 43.2%
3932290 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.75 50.0 3.92e-01 74.5% 34.5%
3873240 378.1.1.25 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › MH1+NfI_DNAbd_pre-N 0.74 64.0 4.42e-01 96.4% 53.5%
4034482 1076.1.1.0 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.74 50.0 3.30e-01 70.9% 17.9%
5039745 2003.1.1.36 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.70 52.0 3.40e-01 78.2% 70.7%
3471666 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.70 61.0 5.42e-01 94.5% 74.7%
4951198 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.68 51.0 3.98e-01 89.1% 37.5%
3603679 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.68 51.0 4.02e-01 92.7% 38.3%
3254545 103.11.1.0 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related 0.67 48.0 4.87e-01 80.0% 76.4%
3379763 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.67 57.0 5.02e-01 94.5% 70.0%
4986010 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 3.69e-01 100.0% 24.4%
4368317 5067.1.1.1 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ACR_tran 0.66 57.0 3.69e-01 94.5% 46.2%
3723625 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.66 55.0 4.28e-01 100.0% 85.9%
3500120 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.65 48.0 3.23e-01 80.0% 24.2%
3973994 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.64 37.0 3.38e-01 83.6% 41.3%
3617570 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.64 46.0 3.35e-01 78.2% 30.0%
5055246 103.6.1.1 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain › FGAR-AT_linker 0.64 45.0 3.85e-01 76.4% 46.1%
3398172 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 53.0 4.30e-01 94.5% 52.4%
5016427 2007.1.16.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › DUF1847 0.63 42.0 2.93e-01 70.9% 26.0%
3176246 5050.1.1.14 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ATG22 0.62 50.0 3.30e-01 94.5% 33.6%
3182801 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.60 51.0 3.96e-01 100.0% 92.3%
3690869 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.23e-01 94.5% 63.2%
3928401 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 40.0 3.98e-01 96.4% 68.3%
3599791 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 48.0 2.95e-01 98.2% 26.8%
3831185 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.56 38.0 3.63e-01 72.7% 61.4%
3396456 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.54 44.0 3.71e-01 100.0% 95.5%
3503580 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.52 44.0 3.55e-01 100.0% 98.3%
D5 medium residues 393-465
PDB