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MT119766.1__QIN95358.1__PBR31_00047__00047

Bact-Vir

MT119766.1__QIN95358.1__PBR31_00047__00047

Identity

Accession:
MT119766 ↗
Kingdom:
phage

Quality

46.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_PBR31

TaxID: 2718947

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-86
PDB
D2 medium residues 87-243
PDB
D3 medium residues 277-378
PDB
D4 medium residues 385-448
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6rxpA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.63 42.0 3.74e-01 70.3% 64.2%
2ayjA00 4.10.1060.50 Few Secondary Structures › Irregular › ZNF265 like › 0.60 37.0 3.97e-01 78.1% 71.4%
2yhoE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 39.0 3.84e-01 81.2% 61.4%
2csvA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 34.0 3.30e-01 78.1% 47.2%
2hjhA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.58 39.0 3.24e-01 70.3% 63.1%
1vd4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 42.0 4.25e-01 81.2% 79.0%
1yc5A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.58 40.0 3.68e-01 71.9% 70.2%
2l1aA00 3.10.20.530 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 42.0 3.67e-01 81.2% 55.1%
6k2kA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 35.0 3.72e-01 76.6% 73.7%
2ma6A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 36.0 3.74e-01 81.2% 73.8%
4r7eA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 37.0 3.67e-01 79.7% 68.1%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.53 33.0 3.69e-01 79.7% 83.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3352699 375.1.1.2 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rubredoxin 0.65 47.0 5.21e-01 87.5% 100.0%
3627228 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 39.0 4.27e-01 79.7% 88.0%
3716773 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 40.0 4.42e-01 90.6% 100.0%
3624443 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 37.0 2.34e-01 73.4% 30.4%
3422810 376.1.1.74 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_XB3-XBAT31 0.54 37.0 3.47e-01 71.9% 91.3%
3889970 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.52 32.0 3.50e-01 78.1% 76.0%
3772534 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.52 35.0 3.29e-01 76.6% 54.1%
3886054 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.52 32.0 3.38e-01 78.1% 70.9%
3493360 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.50 31.0 3.38e-01 78.1% 78.0%
3845539 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 35.0 3.20e-01 78.1% 52.2%
3508555 221.1.1.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DIX 0.50 35.0 3.15e-01 75.0% 68.4%