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MT119766.1__QIN95374.1__PBR31_00063__00063

Bact-Vir

MT119766.1__QIN95374.1__PBR31_00063__00063

Identity

Accession:
MT119766 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_PBR31

TaxID: 2718947

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-85
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 41.0 4.57e-01 86.8% 72.4%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 40.0 4.11e-01 84.2% 60.3%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 40.0 4.34e-01 85.5% 72.6%
2vsoF01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 51.0 3.50e-01 90.8% 56.3%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.56e-01 71.1% 51.7%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.58 44.0 3.90e-01 80.3% 76.1%
2p18A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 45.0 3.12e-01 89.5% 77.7%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 41.0 3.18e-01 88.2% 88.5%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.52 43.0 3.13e-01 92.1% 37.0%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.51 43.0 3.27e-01 98.7% 85.7%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 34.0 3.43e-01 100.0% 68.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3957419 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.75 43.0 4.42e-01 86.8% 58.7%
5070059 3834.1.1.25 ↗ alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 0.73 47.0 3.21e-01 76.3% 20.0%
3896484 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.64 44.0 3.77e-01 75.0% 45.0%
3937352 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 44.0 3.89e-01 73.7% 87.0%
3493400 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 44.0 4.02e-01 76.3% 57.1%
3588192 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.62 40.0 4.63e-01 98.7% 100.0%
3714703 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.60 52.0 4.82e-01 100.0% 87.0%
3587376 386.1.1.344 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Arm-DNA-bind_4 0.59 40.0 4.58e-01 98.7% 98.2%
3670595 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 42.0 4.02e-01 77.6% 82.1%
3999570 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.59 41.0 3.76e-01 73.7% 55.2%
3935357 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.48e-01 75.0% 52.5%
3476018 220.1.1.155 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.56 38.0 3.37e-01 73.7% 44.7%
3993981 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.56 43.0 3.07e-01 82.9% 32.0%
3303368 109.4.1.37 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 0.55 46.0 3.08e-01 100.0% 67.9%
4259224 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 33.0 2.66e-01 86.8% 29.0%
3921728 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 43.0 3.83e-01 89.5% 74.8%
3248060 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.54 37.0 3.37e-01 73.7% 50.9%
5011468 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 44.0 3.75e-01 98.7% 55.2%
3236563 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.53 43.0 3.67e-01 89.5% 68.0%
3942396 4.1.1.412 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1062 0.53 38.0 3.65e-01 100.0% 65.6%
3991544 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 44.0 4.03e-01 96.1% 71.0%
4956224 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.52 44.0 3.08e-01 92.1% 52.3%
3718969 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 38.0 3.00e-01 80.3% 36.0%
5076486 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 38.0 2.92e-01 82.9% 53.4%