←Back to structures

MT121967.1__QIW90016.1__X__00007

Bact-Vir

MT121967.1__QIW90016.1__X__00007

Identity

Accession:
MT121967 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_SC_9_H1H8_2017

TaxID: 2723241

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-134_175-238
PDB
Domain cluster: rep: MK170447__AZF89918.1__X__00084__D3-182
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09250.17 best Prim-Pol 72.8 6.10e-20 86.8% 95.6%
D2 high residues 266-351
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 49.0 4.21e-01 88.4% 95.6%
1xp8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.53 33.0 3.74e-01 81.4% 90.0%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 3.85e-01 100.0% 92.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4639076 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 62.0 6.06e-01 100.0% 84.2%
4988150 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.61 44.0 4.15e-01 76.7% 86.7%
4002036 386.1.1.271 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7565 0.56 30.0 3.39e-01 70.9% 67.7%
4929824 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 45.0 3.79e-01 91.9% 64.1%
4163672 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.54 34.0 3.69e-01 81.4% 78.6%
3920725 304.112.1.1 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoL1 0.51 45.0 3.71e-01 100.0% 79.4%
3738064 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 42.0 4.08e-01 93.0% 94.0%
3354127 502.1.1.0 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain 0.51 33.0 3.73e-01 93.0% 93.3%
5010074 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.51 31.0 3.28e-01 81.4% 68.0%
3534814 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.50 38.0 4.07e-01 91.9% 100.0%
D3 high residues 784-895
PDB
Domain cluster: rep: OQ832096.1__WJZ48888.1__X__00037__D370-481
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 43.0 5.13e-01 87.5% 94.7%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.59 46.0 4.50e-01 99.1% 75.8%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.72e-01 88.4% 92.9%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.97e-01 99.1% 70.6%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 31.0 3.45e-01 98.2% 76.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003621 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 51.0 5.46e-01 94.6% 84.2%
5029778 101.1.2.43 ↗ alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.72 50.0 5.53e-01 89.3% 88.9%
3729476 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.69 42.0 4.23e-01 81.2% 60.0%
4012878 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 42.0 4.20e-01 83.9% 60.9%
3177239 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.65 42.0 3.91e-01 84.8% 53.3%
3938377 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.63 40.0 4.50e-01 83.9% 83.5%
3883278 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.62 44.0 4.72e-01 86.6% 85.3%
4974161 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 50.0 4.81e-01 92.9% 85.5%
2774435 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 46.0 4.81e-01 90.2% 91.4%
3875839 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 45.0 4.55e-01 89.3% 81.7%
5005295 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.54 46.0 4.37e-01 92.0% 85.4%
3649376 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.53 44.0 3.96e-01 87.5% 64.7%
3642800 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.53 44.0 4.43e-01 88.4% 86.0%
4956153 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 32.0 3.67e-01 99.1% 85.0%
1884678 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.51 29.0 3.44e-01 94.6% 80.8%
3838844 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.51 33.0 3.58e-01 95.5% 77.7%
D4 medium residues 398-495_514-542
PDB
Domain cluster: representative
D5 medium residues 550-624_686-783
PDB
Domain cluster: rep: NC_052975.1__YP_009997682.1__JT317_gp67__00067__D594-660_737-825
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 49.0 4.19e-01 90.2% 100.0%
1dbrC00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 34.0 3.21e-01 89.6% 48.4%
6xm1C01 3.40.50.2060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 0.53 29.0 3.32e-01 89.6% 68.5%
1b0zA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 39.0 3.59e-01 79.2% 85.0%
7o0aD01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 39.0 3.64e-01 78.6% 87.0%
1tjyA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 32.0 3.36e-01 88.4% 69.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253892 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.86 66.0 6.33e-01 78.6% 100.0%
5022020 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.77 68.0 5.82e-01 92.5% 87.5%
4959586 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.76 71.0 5.94e-01 99.4% 90.0%
5064031 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 54.0 4.36e-01 89.6% 92.9%
4315678 2007.6.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.52 38.0 3.79e-01 75.1% 84.9%
1115361 2007.6.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI 0.52 38.0 3.53e-01 76.3% 77.9%
3386587 2007.6.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI 0.52 38.0 3.65e-01 75.1% 91.3%
4087871 2007.6.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.51 37.0 3.65e-01 75.7% 83.7%
4655849 2007.6.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI 0.51 38.0 3.64e-01 76.9% 77.8%
4278210 2007.6.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.50 37.0 3.77e-01 76.3% 89.1%
D6 medium residues 625-685
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19263.6 best DUF5906 34.1 5.30e-08 100.0% 52.2%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 58.0 4.12e-01 100.0% 30.2%
1reqB02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.61 45.0 3.53e-01 80.3% 56.1%
3ksmA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 44.0 3.52e-01 78.7% 66.7%
3teoA01 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.60 44.0 3.29e-01 82.0% 75.6%
2ozpA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 41.0 3.07e-01 73.8% 35.2%
4lubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 35.0 3.08e-01 75.4% 73.0%
7lzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.10e-01 73.8% 70.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4876649 1137.1.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.57 40.0 3.71e-01 80.3% 56.2%
4880522 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.57 38.0 4.06e-01 80.3% 86.0%
3656779 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 36.0 2.89e-01 73.8% 91.1%
3381213 207.1.1.76 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_6,LRR_8 0.50 36.0 2.07e-01 82.0% 5.5%