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MT135024.1__QIW90313.1__OLCHANIL_00230__00203

Bact-Vir

MT135024.1__QIW90313.1__OLCHANIL_00230__00203

Identity

Accession:
MT135024 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_V05

TaxID: 2724325

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-74_155-191
PDB
Domain cluster: rep: MH494197.1__AXC39259.1__X__00547__D25-112
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF09293.16 best RNaseH_C 64.3 2.00e-17 85.6% 57.3%
PF02739.23 5_3_exonuc_N 34.4 2.60e-08 80.4% 32.3%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tfrA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.96 93.0 6.95e-01 100.0% 48.1%
1xo1A02 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.80 59.0 4.96e-01 77.3% 54.1%
4cqmG00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 45.0 3.44e-01 74.2% 92.0%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 3.27e-01 81.4% 76.8%
2xdqA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 37.0 3.39e-01 70.1% 100.0%
2qipA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.54 47.0 3.89e-01 100.0% 55.9%
7lldA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 40.0 3.06e-01 79.4% 64.3%
4oxiA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 46.0 3.05e-01 97.9% 42.3%
1r6dA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.51 38.0 3.86e-01 79.4% 94.8%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.51 38.0 3.18e-01 79.4% 95.9%
1l7eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 41.0 3.34e-01 85.6% 91.5%
2k4mA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 36.0 3.11e-01 74.2% 84.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942445 2006.1.4.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.78 63.0 4.96e-01 84.5% 49.7%
4355422 2006.1.4.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.77 61.0 4.88e-01 84.5% 45.7%
5084102 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.68 48.0 3.27e-01 74.2% 64.8%
3657613 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.62 43.0 3.51e-01 72.2% 96.7%
None — 0.60 51.0 3.43e-01 93.8% 95.7%
5006750 2003.1.2.303 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › PF29717 0.57 47.0 3.71e-01 88.7% 97.4%
3275082 2007.1.16.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.53 39.0 3.68e-01 76.3% 96.5%
3666107 7574.1.1.5 ↗ a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_C 0.52 38.0 2.98e-01 77.3% 81.2%
5025487 7574.1.1.0 ↗ a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) 0.52 44.0 3.84e-01 93.8% 96.0%
3375545 7518.1.1.0 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.51 37.0 3.46e-01 76.3% 96.0%
3454343 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 37.0 3.34e-01 75.3% 90.0%
4012850 7520.1.1.0 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.51 36.0 3.01e-01 75.3% 96.6%
2533813 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.50 45.0 3.51e-01 100.0% 76.9%
D2 high residues 78-153
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09293.16 best RNaseH_C 139.8 8.70e-41 100.0% 62.1%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h7iA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.88 82.0 8.18e-01 98.7% 97.4%
5hmlA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.65 57.0 5.61e-01 97.4% 90.0%
2nyvA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 47.0 5.08e-01 98.7% 96.9%
1wh4A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 42.0 4.02e-01 100.0% 72.3%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.53 45.0 4.40e-01 100.0% 89.7%
3ccfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 45.0 3.17e-01 100.0% 39.9%
2eucA00 1.10.8.570 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB 0.50 43.0 3.95e-01 100.0% 90.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
390596 102.1.1.19 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNaseH_C 0.89 83.0 6.76e-01 100.0% 58.5%
3838579 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.63 55.0 5.48e-01 100.0% 92.5%
3640537 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.55 47.0 4.55e-01 100.0% 84.7%