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MT135025.1__QIW90508.1__GCAPEGMB_00161__00161

Bact-Vir

MT135025.1__QIW90508.1__GCAPEGMB_00161__00161

Identity

Accession:
MT135025 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_V07

TaxID: 2724326

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-80
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.75 60.0 4.87e-01 86.3% 66.4%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.71 63.0 5.58e-01 100.0% 94.9%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.71 60.0 5.31e-01 91.3% 78.6%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.68 55.0 5.15e-01 88.7% 88.9%
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.68 58.0 5.05e-01 95.0% 78.2%
3qmfA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.67 47.0 3.98e-01 73.8% 90.3%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 48.0 3.71e-01 76.2% 38.8%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.66 49.0 4.90e-01 77.5% 89.0%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.66 57.0 4.99e-01 98.8% 73.6%
3cxbA01 3.30.2440.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA 0.66 46.0 4.11e-01 73.8% 60.0%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.65 49.0 4.02e-01 83.7% 83.6%
3ctkA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.64 44.0 3.47e-01 71.2% 61.7%
4kt3B00 3.10.450.170 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens 0.63 46.0 3.97e-01 78.8% 68.0%
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.63 44.0 4.55e-01 76.2% 78.7%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.61 49.0 3.90e-01 86.3% 77.8%
2fiwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 41.0 3.24e-01 70.0% 80.6%
2i8dA01 3.90.1150.200 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 43.0 4.35e-01 78.8% 76.5%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 41.0 4.29e-01 83.7% 80.6%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 39.0 3.78e-01 83.7% 61.8%
1xf8A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 44.0 3.50e-01 81.2% 89.7%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.58 44.0 4.07e-01 82.5% 74.0%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 39.0 2.75e-01 78.8% 31.3%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 39.0 3.18e-01 77.5% 89.0%
1boxA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.54 39.0 3.77e-01 77.5% 82.1%
2rhqB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 47.0 3.48e-01 96.2% 37.7%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 37.0 2.86e-01 72.5% 36.1%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 41.0 4.06e-01 85.0% 91.6%
6vq6I01 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.52 36.0 3.34e-01 75.0% 82.4%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.51 42.0 2.88e-01 93.8% 45.4%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.51 41.0 2.73e-01 93.8% 36.8%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.51 42.0 2.84e-01 97.5% 79.9%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.69e-01 88.7% 90.8%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.50 42.0 3.33e-01 95.0% 82.5%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 39.0 2.69e-01 87.5% 88.2%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4971601 241.14.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.78 62.0 6.54e-01 92.5% 97.1%
4928574 241.11.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.75 64.0 6.22e-01 95.0% 95.5%
4494810 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.74 56.0 5.69e-01 91.3% 81.2%
3839444 241.9.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.73 63.0 5.52e-01 96.2% 87.5%
6642 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.71 63.0 5.58e-01 100.0% 94.9%
4954638 241.9.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.70 62.0 5.50e-01 98.8% 87.7%
4033928 241.9.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.70 59.0 5.15e-01 95.0% 79.2%
4937526 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.69 59.0 5.00e-01 93.8% 70.0%
4879580 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.69 47.0 3.77e-01 71.2% 41.2%
4977574 241.11.1.7 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF3788 0.68 58.0 4.98e-01 95.0% 97.7%
4979253 241.9.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.65 55.0 4.99e-01 96.2% 86.4%
3941694 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.64 55.0 5.01e-01 98.8% 99.1%
3247665 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 48.0 3.97e-01 78.8% 51.1%
3978651 241.13.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif 0.63 44.0 4.05e-01 72.5% 64.8%
3619889 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.63 46.0 4.84e-01 80.0% 87.1%
3239249 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 47.0 3.33e-01 85.0% 25.1%
3403609 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.63 47.0 4.74e-01 81.2% 79.7%
3235669 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 47.0 4.09e-01 85.0% 51.2%
4873705 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.63 45.0 3.86e-01 76.2% 48.5%
3556708 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.63 47.0 4.92e-01 80.0% 89.3%
5018904 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.62 46.0 3.46e-01 77.5% 37.4%
3581854 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 45.0 4.37e-01 78.8% 67.8%
3226910 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.62 49.0 3.60e-01 86.3% 35.5%
3899940 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.62 47.0 4.73e-01 80.0% 83.7%
3490378 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.62 47.0 4.73e-01 80.0% 83.7%
3220002 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.62 47.0 3.35e-01 83.7% 26.2%
3171576 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.62 47.0 4.71e-01 81.2% 91.3%
3228484 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 47.0 3.37e-01 86.3% 26.3%
3237193 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.61 51.0 2.83e-01 87.5% 36.1%
4017381 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.61 46.0 4.25e-01 81.2% 83.8%
4504378 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.61 46.0 4.45e-01 81.2% 85.6%
3238801 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 47.0 3.01e-01 86.3% 27.4%
4309285 3844.2.1.2 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.60 46.0 3.50e-01 81.2% 71.9%
3243587 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.60 47.0 3.20e-01 86.3% 24.8%
3228574 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 45.0 3.18e-01 85.0% 25.2%
3225057 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 45.0 3.52e-01 86.3% 35.1%
3236616 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 45.0 3.12e-01 85.0% 23.7%
3239485 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 46.0 4.05e-01 86.3% 56.2%
3453949 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 47.0 3.09e-01 85.0% 37.5%
3211176 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 44.0 3.18e-01 86.3% 25.9%
4973622 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.58 40.0 4.06e-01 87.5% 72.5%
3916127 233.1.1.0 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.57 46.0 3.59e-01 87.5% 97.2%
3786550 5.1.4.219 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.57 39.0 2.44e-01 71.2% 36.1%
3247669 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.57 44.0 3.17e-01 86.3% 35.9%
3232437 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 44.0 4.04e-01 86.3% 62.7%
3228567 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.57 46.0 3.79e-01 86.3% 57.9%
3212404 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.57 44.0 3.18e-01 86.3% 38.0%
3227136 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 41.0 3.16e-01 86.3% 31.0%
4990102 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 31.0 3.80e-01 86.3% 95.6%
3994162 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 48.0 3.79e-01 97.5% 96.0%
1291143 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.55 50.0 3.99e-01 98.8% 85.8%
None — 0.54 45.0 3.01e-01 97.5% 69.7%
3229102 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 42.0 3.03e-01 86.3% 36.8%
3222575 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 41.0 2.98e-01 86.3% 26.6%
3553132 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 46.0 2.67e-01 100.0% 54.0%
3461127 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 41.0 4.10e-01 87.5% 83.7%
4478959 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.52 36.0 3.67e-01 86.3% 77.3%