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MT135025.1__QIW90608.1__GCAPEGMB_00261__00261

Bact-Vir

MT135025.1__QIW90608.1__GCAPEGMB_00261__00261

Identity

Accession:
MT135025 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_V07

TaxID: 2724326

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.67 47.0 4.26e-01 89.2% 54.5%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.79e-01 77.0% 97.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.80e-01 85.1% 78.3%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 4.36e-01 83.8% 94.2%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 4.45e-01 83.8% 93.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 4.97e-01 81.1% 90.3%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 50.0 4.48e-01 85.1% 89.5%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 50.0 4.36e-01 85.1% 80.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 4.48e-01 85.1% 86.4%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 50.0 4.29e-01 85.1% 89.0%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 48.0 3.91e-01 83.8% 61.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 48.0 4.53e-01 83.8% 89.1%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.25e-01 85.1% 88.9%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.30e-01 85.1% 83.2%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 48.0 3.96e-01 83.8% 71.6%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.19e-01 85.1% 75.2%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.34e-01 87.8% 79.8%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.78e-01 87.8% 93.2%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.61 52.0 4.48e-01 94.6% 74.4%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 4.30e-01 83.8% 89.7%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.60 42.0 3.56e-01 86.5% 43.5%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 46.0 4.42e-01 83.8% 95.4%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 4.34e-01 90.5% 88.8%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.59 45.0 4.43e-01 81.1% 100.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.01e-01 87.8% 67.5%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.58 51.0 4.19e-01 100.0% 79.4%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.60e-01 89.2% 81.2%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.57 47.0 4.62e-01 91.9% 97.5%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.33e-01 98.6% 91.7%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 45.0 3.08e-01 90.5% 48.8%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 43.0 4.62e-01 90.5% 98.4%
4me8A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.56 44.0 3.81e-01 85.1% 97.4%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.53e-01 100.0% 98.0%
1lwuC01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.56 39.0 3.18e-01 74.3% 92.1%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 46.0 4.25e-01 91.9% 94.7%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.55 46.0 3.87e-01 94.6% 78.2%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 46.0 4.25e-01 93.2% 94.7%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.70e-01 94.6% 97.3%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.74e-01 94.6% 94.2%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.54 45.0 4.20e-01 91.9% 97.8%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 44.0 3.75e-01 89.2% 84.9%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 4.14e-01 94.6% 92.1%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 45.0 3.85e-01 95.9% 96.7%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.49e-01 87.8% 90.9%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.53 34.0 3.79e-01 94.6% 86.2%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.53 44.0 3.87e-01 97.3% 89.9%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.53 40.0 2.68e-01 82.4% 40.0%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 39.0 3.25e-01 83.8% 94.2%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 40.0 4.17e-01 95.9% 93.9%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.51 42.0 4.17e-01 95.9% 94.9%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 44.0 4.15e-01 98.6% 89.0%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 39.0 3.98e-01 85.1% 91.9%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 44.0 3.74e-01 100.0% 97.7%
3puaA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.50 45.0 2.98e-01 98.6% 64.3%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 45.0 3.42e-01 100.0% 54.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.70 49.0 4.53e-01 86.5% 56.8%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 45.0 5.13e-01 81.1% 89.1%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 45.0 5.07e-01 81.1% 90.9%
3989485 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.68 43.0 5.02e-01 77.0% 96.0%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 50.0 4.10e-01 90.5% 43.7%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.99e-01 86.5% 84.6%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 41.0 4.74e-01 81.1% 92.0%
3252809 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 51.0 4.31e-01 85.1% 66.2%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 44.0 4.71e-01 91.9% 83.6%
4646593 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.66 49.0 4.02e-01 90.5% 43.7%
4957377 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.65 40.0 4.33e-01 82.4% 73.0%
3178693 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 51.0 4.38e-01 85.1% 78.3%
3903728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 4.59e-01 83.8% 90.0%
3938714 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 51.0 4.31e-01 85.1% 74.4%
4951012 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.65 41.0 4.81e-01 95.9% 96.0%
3618718 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 4.29e-01 83.8% 81.7%
4985100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 41.0 4.74e-01 81.1% 96.0%
5003618 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 38.0 4.59e-01 78.4% 97.8%
3479079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 49.0 4.18e-01 85.1% 91.2%
3979962 9.1.1.69 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N 0.62 51.0 4.90e-01 90.5% 97.6%
3250163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 4.43e-01 85.1% 89.5%
4075150 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 44.0 3.32e-01 89.2% 29.2%
3596153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 47.0 4.19e-01 85.1% 83.3%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.60 39.0 4.05e-01 79.7% 70.0%
3504519 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.59 50.0 4.19e-01 94.6% 79.2%
3934671 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.58 49.0 4.69e-01 91.9% 82.4%
4676513 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.58 43.0 3.30e-01 79.7% 45.6%
3833030 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.58 46.0 3.84e-01 87.8% 77.0%
3788776 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.58 43.0 2.83e-01 79.7% 31.9%
3628119 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.58 47.0 4.61e-01 90.5% 87.5%
3870917 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 51.0 3.95e-01 100.0% 56.4%
4017529 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.57 50.0 4.03e-01 100.0% 78.7%
3921926 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 4.29e-01 100.0% 78.3%
1879626 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.56 41.0 2.92e-01 85.1% 25.2%
4213984 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.56 42.0 3.31e-01 82.4% 46.3%
4422834 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.56 42.0 4.23e-01 98.6% 80.0%
3507692 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 46.0 3.69e-01 94.6% 74.0%
4945089 3487.1.1.0 ↗ a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 0.54 41.0 3.70e-01 83.8% 63.6%
4406602 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.54 43.0 3.57e-01 87.8% 77.5%
3388697 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.53 44.0 4.31e-01 90.5% 92.5%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 4.18e-01 89.2% 95.4%
4485519 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.79e-01 94.6% 80.0%
3814287 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 39.0 2.56e-01 85.1% 42.7%
3939093 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.50 40.0 4.05e-01 91.9% 90.7%
3237575 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 39.0 2.75e-01 89.2% 42.1%
3983510 219.1.1.152 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF26124 0.50 40.0 3.19e-01 90.5% 56.4%