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MT135025.1__QIW90709.1__GCAPEGMB_00390__00362
Bact-VirMT135025.1__QIW90709.1__GCAPEGMB_00390__00362
Identity
- Accession:
- MT135025 ↗
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Schizotequatrovirus›
Vibrio_phage_V07
TaxID: 2724326
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-54
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.81 | 67.0 | 4.65e-01 | 89.6% | 65.8% |
| 4jvtA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.78 | 58.0 | 6.25e-01 | 81.2% | 92.7% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 58.0 | 5.44e-01 | 81.2% | 73.7% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.76 | 52.0 | 5.09e-01 | 72.9% | 71.7% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.75 | 52.0 | 4.59e-01 | 72.9% | 91.2% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.74 | 57.0 | 4.78e-01 | 95.8% | 50.6% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.74 | 55.0 | 4.92e-01 | 89.6% | 56.7% |
| 7byjA01 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.73 | 53.0 | 3.97e-01 | 97.9% | 31.7% |
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.72 | 59.0 | 4.97e-01 | 89.6% | 55.1% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.70 | 48.0 | 4.99e-01 | 72.9% | 91.1% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.69 | 51.0 | 4.41e-01 | 81.2% | 75.9% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.69 | 56.0 | 3.71e-01 | 89.6% | 25.7% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.67 | 51.0 | 4.62e-01 | 85.4% | 61.5% |
| 4u04A02 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.66 | 56.0 | 3.66e-01 | 97.9% | 62.4% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 49.0 | 4.43e-01 | 81.2% | 63.2% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.66 | 53.0 | 4.63e-01 | 95.8% | 58.9% |
| 4ertA01 | 1.10.490.160 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.65 | 57.0 | 3.92e-01 | 100.0% | 58.9% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.65 | 50.0 | 4.02e-01 | 85.4% | 89.4% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.64 | 58.0 | 3.89e-01 | 100.0% | 49.1% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.63 | 54.0 | 3.76e-01 | 100.0% | 42.5% |
| 4fvmA04 | 6.10.10.100 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › | 0.62 | 47.0 | 4.79e-01 | 97.9% | 87.0% |
| 5jnmA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 48.0 | 3.32e-01 | 87.5% | 27.0% |
| 2l4bA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.54 | 41.0 | 3.55e-01 | 89.6% | 50.0% |
| 1xt9A00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.54 | 45.0 | 3.03e-01 | 97.9% | 51.0% |
| 3l4gB03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.54 | 41.0 | 3.66e-01 | 87.5% | 90.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3702384 | 5046.1.1.0 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b | 0.80 | 66.0 | 4.24e-01 | 95.8% | 19.3% |
| 3387239 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 53.0 | 3.87e-01 | 75.0% | 29.2% |
| 3588971 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.76 | 59.0 | 5.05e-01 | 89.6% | 53.3% |
| 4303085 | 3755.3.1.467 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DRC7_C | 0.75 | 56.0 | 4.13e-01 | 79.2% | 31.7% |
| 3816224 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.75 | 58.0 | 5.09e-01 | 97.9% | 57.1% |
| 3624468 | 109.3.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 | 0.75 | 50.0 | 3.63e-01 | 89.6% | 26.4% |
| 4003837 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.72 | 60.0 | 4.63e-01 | 89.6% | 45.0% |
| 5072392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 44.0 | 4.22e-01 | 72.9% | 54.5% |
| 3794323 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.71 | 57.0 | 5.89e-01 | 89.6% | 93.3% |
| 3169408 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.71 | 55.0 | 4.88e-01 | 97.9% | 58.6% |
| 3426400 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.68 | 52.0 | 5.01e-01 | 89.6% | 74.5% |
| 3245965 | 5071.1.1.0 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 0.61 | 46.0 | 4.47e-01 | 81.2% | 88.9% |
| 3226769 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 52.0 | 4.63e-01 | 97.9% | 98.6% |
| 3734418 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.60 | 53.0 | 3.20e-01 | 100.0% | 40.3% |
| 3288147 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.60 | 52.0 | 4.14e-01 | 100.0% | 64.0% |
| 2979225 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.57 | 52.0 | 3.48e-01 | 100.0% | 52.8% |