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MT135176.1__QLF80267.1__X__00004

Bact-Vir

MT135176.1__QLF80267.1__X__00004

Identity

Accession:
MT135176 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-52
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13269.12 best DUF4060 57.3 2.00e-15 98.1% 66.2%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.78 60.0 4.39e-01 96.2% 32.4%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.75 57.0 5.81e-01 92.3% 86.0%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.74 58.0 4.50e-01 96.2% 39.5%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.73 51.0 3.76e-01 73.1% 33.1%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.73 64.0 5.46e-01 98.1% 71.4%
7z0sE02 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.73 63.0 3.86e-01 98.1% 80.8%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.71 53.0 4.86e-01 96.2% 60.9%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.71 61.0 5.17e-01 100.0% 71.4%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 55.0 3.59e-01 96.2% 20.5%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.69 52.0 3.03e-01 96.2% 9.7%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.67 45.0 3.34e-01 71.2% 31.5%
2f20A00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.67 51.0 3.25e-01 80.8% 63.9%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.67 46.0 4.50e-01 71.2% 83.1%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 54.0 4.30e-01 96.2% 50.4%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.64 47.0 4.43e-01 82.7% 65.6%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 53.0 3.96e-01 96.2% 71.7%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.64 54.0 4.61e-01 96.2% 79.3%
2o5vA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 54.0 3.74e-01 96.2% 29.3%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 50.0 3.74e-01 88.5% 43.5%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.63 51.0 3.95e-01 98.1% 61.4%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.62 51.0 4.23e-01 98.1% 75.7%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 47.0 3.53e-01 86.5% 66.0%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.61 50.0 3.90e-01 90.4% 54.0%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.61 48.0 3.06e-01 90.4% 25.3%
1ckmA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.61 52.0 3.80e-01 100.0% 79.4%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.61 49.0 3.86e-01 90.4% 56.2%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.61 41.0 4.37e-01 90.4% 84.1%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 4.27e-01 84.6% 80.3%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.60 50.0 3.80e-01 96.2% 38.0%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.60 52.0 4.39e-01 100.0% 65.2%
3lxuX02 2.20.25.690 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 47.0 4.30e-01 88.5% 86.1%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.59 49.0 3.61e-01 96.2% 57.5%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 40.0 3.45e-01 73.1% 93.0%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 4.07e-01 92.3% 71.4%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 3.30e-01 76.9% 72.8%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 2.93e-01 78.8% 83.7%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.55 50.0 3.62e-01 100.0% 66.9%
2nbmA00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.55 46.0 3.69e-01 96.2% 46.8%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.55 48.0 3.48e-01 98.1% 86.2%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.55 45.0 3.26e-01 94.2% 78.1%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 43.0 3.27e-01 92.3% 50.0%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.80e-01 92.3% 69.1%
1pn2D02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 44.0 3.45e-01 100.0% 45.2%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.51 39.0 3.43e-01 94.2% 89.5%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938083 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.80 70.0 5.67e-01 96.2% 56.8%
4031638 7089.1.1.1 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF1108 0.79 60.0 5.02e-01 80.8% 49.4%
None 0.77 61.0 4.00e-01 94.2% 21.1%
3579037 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.77 67.0 5.25e-01 96.2% 50.5%
4030408 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.77 60.0 3.87e-01 92.3% 19.6%
3937854 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.76 65.0 5.25e-01 96.2% 54.0%
3240191 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.73 62.0 4.70e-01 96.2% 49.6%
3589823 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.73 50.0 4.62e-01 71.2% 61.5%
5040467 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.72 59.0 3.78e-01 90.4% 19.2%
3256359 5.1.4.151 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.72 63.0 3.60e-01 96.2% 22.0%
3385678 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.72 57.0 3.79e-01 92.3% 22.1%
None 0.72 57.0 3.76e-01 92.3% 20.9%
None 0.72 61.0 4.05e-01 98.1% 35.0%
3623169 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 61.0 4.87e-01 96.2% 67.6%
5064517 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.71 53.0 3.90e-01 80.8% 50.4%
3931272 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 48.0 3.33e-01 73.1% 30.3%
3927525 2484.1.1.145 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.70 61.0 3.90e-01 100.0% 21.6%
4135052 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.70 57.0 3.47e-01 94.2% 15.1%
4416424 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.70 56.0 3.40e-01 92.3% 14.4%
3509348 214.1.1.15 a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 0.69 59.0 3.65e-01 96.2% 18.0%
3924869 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 52.0 3.62e-01 82.7% 33.5%
3941356 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 57.0 4.38e-01 94.2% 45.0%
4049335 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.68 55.0 3.35e-01 94.2% 14.5%
3933294 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 58.0 4.61e-01 96.2% 50.5%
4930594 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.68 46.0 4.09e-01 71.2% 69.3%
3164017 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.67 54.0 4.49e-01 88.5% 53.3%
3583928 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 57.0 4.54e-01 96.2% 50.5%
3620802 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 56.0 4.34e-01 96.2% 47.5%
3715939 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.66 54.0 3.60e-01 90.4% 38.5%
3924148 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.66 48.0 3.38e-01 78.8% 32.7%
3937782 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.65 49.0 3.40e-01 80.8% 33.9%
4573440 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.65 53.0 3.22e-01 94.2% 14.9%
4407464 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.64 52.0 3.21e-01 94.2% 16.2%
3619626 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 54.0 4.47e-01 96.2% 55.8%
None 0.64 51.0 3.16e-01 94.2% 15.1%
4644945 246.1.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase 0.64 53.0 3.55e-01 96.2% 23.2%
3344476 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.63 52.0 4.03e-01 100.0% 43.0%
3975228 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.63 54.0 3.25e-01 100.0% 97.1%
3390184 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.63 51.0 3.02e-01 88.5% 33.9%
5045661 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 50.0 4.48e-01 90.4% 84.0%
3510980 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.62 51.0 3.16e-01 92.3% 90.7%
3710891 330.1.1.22 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.61 47.0 3.80e-01 84.6% 82.0%
3972580 331.1.1.3 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.61 49.0 4.28e-01 90.4% 78.8%
5012108 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 46.0 2.87e-01 96.2% 14.4%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.59 50.0 3.77e-01 100.0% 42.1%
3957486 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 49.0 3.79e-01 94.2% 85.0%
3914585 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 52.0 4.10e-01 100.0% 72.4%
4078775 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 50.0 4.45e-01 98.1% 80.0%
3547629 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.57 47.0 3.90e-01 96.2% 98.0%
3232235 390.1.1.7 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.57 46.0 3.63e-01 92.3% 100.0%
4941364 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.56 41.0 3.47e-01 86.5% 81.0%
3553623 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.56 46.0 3.62e-01 100.0% 44.8%
4436049 1190.1.1.1 a+b two layers › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › CsgF 0.55 45.0 3.67e-01 100.0% 49.0%
4140244 283.2.1.9 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator 0.54 42.0 3.52e-01 98.1% 73.0%
3574976 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.53 42.0 4.18e-01 94.2% 94.5%
3509569 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 39.0 3.20e-01 88.5% 98.2%
4985735 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.51 35.0 3.02e-01 73.1% 62.1%
3742185 2003.1.5.26 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.50 34.0 2.10e-01 71.2% 58.8%