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MT135176.1__QLF80274.1__X__00068

Bact-Vir

MT135176.1__QLF80274.1__X__00068

Identity

Accession:
MT135176 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 51.0 4.85e-01 98.4% 67.6%
2hekA02 3.30.70.1370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › HD domain like 0.68 58.0 5.13e-01 95.1% 86.4%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 50.0 4.31e-01 98.4% 56.8%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.61 45.0 4.10e-01 95.1% 57.5%
3mb5A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 51.0 3.68e-01 98.4% 34.2%
2igtA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 51.0 3.44e-01 96.7% 25.8%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 39.0 2.78e-01 100.0% 21.7%
5c0oH00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 51.0 3.58e-01 98.4% 30.3%
2zogA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 50.0 3.67e-01 96.7% 76.4%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.59 46.0 3.22e-01 96.7% 25.0%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.59 51.0 4.35e-01 96.7% 60.6%
4bfeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 3.76e-01 96.7% 55.6%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 46.0 4.13e-01 100.0% 60.7%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 49.0 4.24e-01 95.1% 75.8%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 46.0 3.45e-01 96.7% 33.3%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 4.16e-01 96.7% 64.9%
1vkvA01 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 48.0 3.44e-01 96.7% 70.0%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 4.16e-01 100.0% 62.6%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.55 47.0 3.68e-01 100.0% 54.3%
1b3tA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.55 46.0 3.62e-01 100.0% 46.3%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 46.0 3.56e-01 100.0% 45.7%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.65e-01 98.4% 51.9%
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 3.35e-01 98.4% 82.0%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 46.0 4.12e-01 95.1% 69.4%
1gmnA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.54 40.0 3.61e-01 98.4% 55.7%
6n8eA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 47.0 3.45e-01 100.0% 65.7%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 44.0 3.88e-01 95.1% 64.6%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 47.0 3.95e-01 100.0% 58.9%
3rtyB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 45.0 3.74e-01 95.1% 100.0%
4hvzA02 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.53 44.0 3.75e-01 100.0% 74.1%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 3.86e-01 100.0% 62.1%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.01e-01 95.1% 32.8%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.63e-01 93.4% 67.6%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 4.02e-01 100.0% 70.5%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.74e-01 100.0% 63.2%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.69e-01 96.7% 58.3%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.55e-01 98.4% 66.1%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 42.0 3.79e-01 95.1% 68.9%
2f8mA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 42.0 4.00e-01 100.0% 81.0%
3ngqA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 41.0 2.65e-01 93.4% 30.7%
2edmA00 2.60.40.2770 Mainly Beta › Sandwich › Immunoglobulin-like › WSSV envelope protein-like 0.51 40.0 3.13e-01 93.4% 94.4%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 43.0 3.65e-01 98.4% 57.5%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.60e-01 96.7% 63.1%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.50e-01 95.1% 55.4%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.51 41.0 3.84e-01 100.0% 71.6%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 41.0 2.99e-01 96.7% 84.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3172533 304.9.1.159 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF29309 0.64 56.0 4.78e-01 100.0% 71.0%
4994628 328.9.1.0 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain 0.60 50.0 4.46e-01 96.7% 64.4%
3598240 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.20e-01 96.7% 55.5%
3264940 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.59 48.0 3.99e-01 96.7% 53.3%
4935750 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.58 48.0 3.17e-01 96.7% 20.4%
3723193 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 50.0 3.74e-01 100.0% 40.0%
3823137 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.58 51.0 3.93e-01 100.0% 44.3%
4463387 304.5.1.18 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › PrmA 0.58 46.0 4.00e-01 96.7% 55.2%
3555669 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.58 51.0 4.10e-01 100.0% 53.3%
3417210 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.57 49.0 4.40e-01 100.0% 71.1%
4812015 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.57 47.0 3.53e-01 96.7% 36.7%
3522520 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.57 47.0 4.41e-01 96.7% 73.8%
4932762 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.57 46.0 3.19e-01 96.7% 25.4%
3397398 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.57 47.0 4.40e-01 100.0% 73.8%
3893192 327.11.2.26 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_1st 0.57 47.0 4.45e-01 100.0% 78.7%
4515208 304.24.1.7 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › V_ATPase_I 0.56 48.0 3.99e-01 100.0% 53.0%
3929632 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.56 48.0 4.08e-01 98.4% 57.1%
3569962 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.56 47.0 4.12e-01 100.0% 62.1%
3383377 2498.1.1.6 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.56 41.0 2.37e-01 82.0% 62.5%
3685597 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.56 47.0 3.25e-01 98.4% 75.4%
2754119 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.55 46.0 2.95e-01 100.0% 93.4%
3944327 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.55 47.0 3.39e-01 98.4% 84.3%
5080913 2003.1.5.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.55 47.0 2.80e-01 98.4% 43.0%
3189683 331.3.1.46 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 0.55 45.0 3.27e-01 100.0% 79.0%
3593784 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.54 45.0 4.15e-01 100.0% 70.6%
3638246 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 46.0 3.71e-01 98.4% 55.2%
3200737 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.54 46.0 3.12e-01 100.0% 26.1%
4058358 327.11.2.26 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_1st 0.54 46.0 4.27e-01 100.0% 77.5%
5031916 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.54 46.0 3.70e-01 100.0% 48.8%
4451470 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.54 45.0 3.66e-01 100.0% 51.5%
4387576 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.53 45.0 3.81e-01 96.7% 58.1%
5013813 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.53 46.0 3.48e-01 98.4% 44.0%
3187395 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.53 42.0 3.07e-01 88.5% 98.9%
3882927 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.52 44.0 2.90e-01 96.7% 28.0%
4928530 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.52 43.0 3.99e-01 95.1% 73.8%
3702503 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.52 47.0 4.14e-01 100.0% 72.2%
3545384 3602.1.1.11 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › CEP76_C 0.52 44.0 3.56e-01 100.0% 47.7%
3939548 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.52 43.0 3.74e-01 91.8% 76.8%
5030848 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 45.0 3.49e-01 100.0% 44.8%
4966643 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.52 45.0 3.83e-01 100.0% 61.9%
5027606 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 43.0 3.49e-01 96.7% 50.4%
3623510 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.52 43.0 3.70e-01 96.7% 60.0%
4019950 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 43.0 2.68e-01 98.4% 15.1%
3628907 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.51 39.0 2.21e-01 90.2% 11.4%
4091380 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.51 42.0 3.62e-01 100.0% 76.4%
3684423 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 42.0 3.70e-01 100.0% 61.0%
3932153 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.51 41.0 3.28e-01 90.2% 72.3%
4029423 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.51 44.0 3.36e-01 100.0% 71.3%
4201083 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.51 42.0 3.65e-01 96.7% 64.0%
3632224 810.1.1.0 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.51 43.0 3.56e-01 98.4% 55.7%
3741555 4969.1.1.0 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.50 42.0 2.92e-01 100.0% 40.4%
3262393 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.50 40.0 2.77e-01 96.7% 23.1%
3401330 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.50 41.0 3.41e-01 96.7% 61.7%
4981307 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.50 42.0 2.94e-01 98.4% 72.0%
D2 medium residues 62-121
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.71 57.0 5.16e-01 100.0% 64.4%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.68 60.0 4.81e-01 100.0% 83.3%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.68 58.0 4.06e-01 100.0% 30.5%
1jelP00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.66 54.0 4.89e-01 100.0% 67.1%
8gq6B01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.64 44.0 3.37e-01 70.0% 62.9%
1mdoA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 45.0 3.50e-01 98.3% 35.7%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 48.0 4.23e-01 88.3% 82.1%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 48.0 4.36e-01 95.0% 100.0%
3ga1A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.61 42.0 3.41e-01 71.7% 71.7%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 46.0 4.12e-01 88.3% 93.6%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.60 50.0 3.92e-01 96.7% 71.7%
4zevA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.60 52.0 4.34e-01 100.0% 65.4%
1rkqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.59 48.0 4.06e-01 93.3% 64.5%
4c2mA04 3.30.1490.180 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii 0.59 49.0 4.62e-01 98.3% 88.3%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.59 50.0 4.22e-01 100.0% 66.0%
1r29A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.58 41.0 3.33e-01 76.7% 68.9%
2fnaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.37e-01 100.0% 28.6%
3daoA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 47.0 4.02e-01 100.0% 67.0%
1hufA00 3.30.1570.10 Alpha Beta › 2-Layer Sandwich › YopH tyrosine phosphatase N-terminal domain › Protein-tyrosine phosphatase, YopH, N-terminal domain 0.56 48.0 3.91e-01 100.0% 72.4%
2hf2B02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.56 47.0 3.99e-01 100.0% 65.4%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.46e-01 91.7% 75.4%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.19e-01 98.3% 92.9%
4tq1A02 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 43.0 3.90e-01 93.3% 85.7%
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.55 46.0 3.75e-01 100.0% 65.6%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 43.0 4.27e-01 100.0% 90.8%
3fzqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.54 45.0 3.77e-01 100.0% 70.4%
1z2nX03 3.30.1490.220 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.54 43.0 3.69e-01 93.3% 53.8%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 45.0 4.11e-01 100.0% 77.6%
4uwwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 43.0 3.38e-01 90.0% 63.8%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 2.93e-01 88.3% 83.0%
1vhvA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.52 44.0 3.49e-01 100.0% 43.2%
3te6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 45.0 3.74e-01 100.0% 73.2%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.63e-01 100.0% 81.2%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.52 41.0 3.98e-01 85.0% 81.8%
1rniA01 3.30.720.160 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal 0.52 44.0 4.27e-01 100.0% 91.4%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.51 39.0 2.99e-01 85.0% 84.7%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 41.0 3.09e-01 100.0% 56.3%
6fyqA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 44.0 3.19e-01 100.0% 60.2%
2i2cA01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.51 45.0 3.53e-01 100.0% 68.8%
3c4nA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 2.76e-01 90.0% 71.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4632150 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.72 42.0 3.65e-01 100.0% 35.8%
2496895 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.09e-01 98.3% 74.2%
5012954 632.2.1.40 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.64 53.0 4.19e-01 98.3% 43.6%
3493963 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 48.0 4.09e-01 81.7% 53.0%
4003270 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.64 56.0 3.52e-01 100.0% 20.3%
5017308 4012.1.1.5 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › DUF515 0.63 52.0 5.23e-01 98.3% 98.3%
3509575 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.63 38.0 2.43e-01 96.7% 12.6%
3483645 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 50.0 4.63e-01 93.3% 97.5%
4441223 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.62 48.0 3.61e-01 85.0% 71.3%
4479016 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.60 50.0 4.26e-01 100.0% 90.9%
3308604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 51.0 4.80e-01 100.0% 96.0%
3966244 4041.1.1.0 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.60 44.0 3.73e-01 98.3% 44.5%
3699077 221.1.1.25 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › APG12 0.60 48.0 4.38e-01 96.7% 96.7%
2700171 275.1.1.1 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.60 48.0 4.39e-01 93.3% 91.6%
3680518 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 49.0 4.31e-01 93.3% 65.6%
3502649 3012.1.1.4 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.59 48.0 4.02e-01 93.3% 62.7%
5049545 275.1.1.1 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.59 47.0 4.75e-01 96.7% 91.7%
1937394 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.59 42.0 3.23e-01 78.3% 34.8%
3934018 109.4.1.1289 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856 0.59 44.0 2.46e-01 80.0% 7.1%
4015760 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 49.0 3.54e-01 98.3% 35.4%
4948679 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.59 47.0 3.04e-01 98.3% 17.2%
3514922 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 48.0 4.23e-01 100.0% 90.0%
3417262 275.1.1.1 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.58 46.0 4.36e-01 91.7% 86.7%
3991455 822.2.1.1 a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.58 43.0 4.48e-01 81.7% 98.2%
3730254 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 47.0 3.56e-01 95.0% 71.5%
4944045 4.17.1.2 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase 0.58 45.0 4.36e-01 88.3% 94.3%
3618553 275.1.1.1 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.58 48.0 4.56e-01 98.3% 89.3%
3373620 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 47.0 4.15e-01 93.3% 68.9%
4933205 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 46.0 4.21e-01 98.3% 100.0%
5004573 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 41.0 3.08e-01 75.0% 98.0%
4978597 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.57 42.0 2.95e-01 86.7% 25.4%
3915527 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.57 43.0 4.11e-01 88.3% 85.3%
3487185 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.55 47.0 3.48e-01 100.0% 36.6%
3819239 221.1.1.13 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA 0.55 45.0 4.02e-01 100.0% 84.2%
3605677 3352.1.1.16 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › ALG3 0.55 48.0 2.97e-01 100.0% 59.7%
2605238 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 44.0 3.72e-01 93.3% 93.5%
4943395 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 2.84e-01 76.7% 42.4%
3935777 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 44.0 4.16e-01 100.0% 93.8%
3985268 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.54 42.0 2.77e-01 85.0% 27.1%
4100838 2006.1.3.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.53 36.0 2.51e-01 70.0% 33.9%
4077806 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.53 46.0 3.27e-01 100.0% 73.7%
4445903 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 40.0 2.67e-01 83.3% 20.0%
3534502 109.4.1.1310 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.53 43.0 2.41e-01 88.3% 32.3%
4953807 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.53 46.0 3.18e-01 100.0% 74.0%
3761667 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 42.0 3.82e-01 86.7% 76.2%
2617497 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 41.0 3.49e-01 93.3% 94.8%
4972199 221.7.1.0 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 0.52 41.0 3.80e-01 93.3% 68.4%
None 0.52 42.0 2.83e-01 91.7% 59.2%
5041715 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 36.0 3.05e-01 78.3% 40.9%
3198047 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 43.0 3.60e-01 93.3% 66.7%
3741078 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.51 41.0 3.97e-01 100.0% 100.0%