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MT151604.1__QIW88779.1__P59_182__00181

Bact-Vir

MT151604.1__QIW88779.1__P59_182__00181

Identity

Accession:
MT151604 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bacillus_phage_P59

TaxID: 2723893

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-58
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 33.0 2.43e-01 100.0% 18.8%
1r6vA03 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.53 41.0 2.56e-01 88.7% 40.3%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.51 44.0 3.63e-01 100.0% 73.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033161 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.77 54.0 3.98e-01 73.6% 38.5%
5053773 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.77 54.0 4.07e-01 73.6% 45.0%
5042684 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.76 52.0 3.97e-01 71.7% 42.5%
5046837 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.73 51.0 3.96e-01 73.6% 46.1%
5042588 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.73 50.0 4.02e-01 71.7% 52.0%
5046836 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.73 51.0 3.93e-01 73.6% 45.2%
5053826 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 50.0 3.93e-01 73.6% 47.3%
5069196 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 49.0 3.88e-01 73.6% 47.3%
5046265 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.61 37.0 3.43e-01 100.0% 45.7%
4936800 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.50 38.0 3.03e-01 100.0% 40.0%
D2 high residues 69-180
PDB
Domain cluster: rep: PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00257__D3-113
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.55 33.0 3.97e-01 74.1% 95.6%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.54 39.0 3.54e-01 73.2% 68.1%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 30.0 2.80e-01 77.7% 41.4%
1ad6A00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 36.0 3.05e-01 83.0% 41.6%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.54 35.0 3.38e-01 73.2% 57.7%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.53 22.0 2.90e-01 100.0% 68.3%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 41.0 3.12e-01 85.7% 95.3%
5ce8A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 27.0 2.68e-01 75.0% 43.1%
5uckB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 43.0 3.24e-01 95.5% 50.7%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.50 37.0 3.15e-01 76.8% 92.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3809576 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.71 35.0 4.56e-01 77.7% 83.1%
3497163 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.70 33.0 3.83e-01 71.4% 61.3%
3588971 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.67 39.0 4.65e-01 80.4% 85.3%
3350634 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.60 41.0 3.04e-01 89.3% 28.9%
3651471 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.60 41.0 2.98e-01 89.3% 27.4%
3690556 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.58 31.0 3.96e-01 73.2% 93.3%
3987874 375.1.1.253 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.57 29.0 3.49e-01 91.1% 73.3%
4675621 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.56 36.0 2.90e-01 76.8% 35.1%
3466972 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.54 40.0 3.65e-01 76.8% 76.6%
3619549 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 46.0 3.18e-01 95.5% 41.9%
4858006 191.1.1.11 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 0.53 34.0 4.04e-01 74.1% 94.8%
3242817 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.51 34.0 2.63e-01 91.1% 29.2%