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MT161383.1__QJB21940.1__XccvBFoX3_gp40__00040

Bact-Vir

MT161383.1__QJB21940.1__XccvBFoX3_gp40__00040

Identity

Accession:
MT161383 ↗
Kingdom:
phage

Quality

66.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Foxunavirus› Xanthomonas_phage_FoX3

TaxID: 2723899

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-109_423-466
PDB
Domain cluster: rep: OR050627.1__WIC41310.1__MA9V1_046__00046__D154-266
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF04851.22 best ResIII 73.9 2.00e-20 90.2% 90.2%
PF00270.36 DEAD 26.2 8.10e-06 88.9% 35.9%
D2 high residues 480-656
PDB
Domain cluster: rep: IMGVR_UViG_3300026211_000011-3300026211-Ga0208132_10019531__D46-252
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00271.38 best Helicase_C 38.4 1.80e-09 66.7% 90.0%
D3 high residues 724-787
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r2jA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.68 36.0 2.69e-01 93.8% 22.2%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 38.0 3.72e-01 100.0% 49.3%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.67 47.0 3.64e-01 73.4% 33.8%
6tqfA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.59 49.0 3.12e-01 100.0% 44.2%
4j31A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 38.0 2.41e-01 70.3% 26.5%
1konA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.50 37.0 3.66e-01 78.1% 75.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3268499 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.71 49.0 4.70e-01 71.9% 69.3%
3336677 605.1.1.132 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 0.71 39.0 3.71e-01 100.0% 46.7%
3296414 192.29.1.168 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 0.67 38.0 3.73e-01 100.0% 51.4%
3802185 192.8.1.359 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF641 0.67 36.0 3.56e-01 98.4% 48.6%
3375617 192.5.1.30 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF641 0.66 39.0 3.59e-01 100.0% 46.3%
3272037 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.64 51.0 4.56e-01 85.9% 66.7%
4948692 206.1.3.120 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › LysX_preATP_grasp 0.62 43.0 2.70e-01 76.6% 13.1%
3226919 109.27.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › DUF1265 0.59 42.0 3.91e-01 82.8% 57.6%
5044493 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.55 46.0 3.65e-01 100.0% 58.6%
4949941 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.54 34.0 3.34e-01 73.4% 57.1%
3177376 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.54 48.0 3.42e-01 100.0% 73.6%
D4 medium residues 111-202_410-422
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.89 85.0 7.57e-01 100.0% 97.9%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 84.0 6.94e-01 100.0% 98.8%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 84.0 7.37e-01 100.0% 99.3%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 82.0 7.27e-01 98.1% 100.0%
1am2A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.87 83.0 6.66e-01 99.0% 100.0%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.86 81.0 6.75e-01 99.0% 100.0%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.86 80.0 6.71e-01 99.0% 100.0%
1zdeA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 80.0 6.80e-01 100.0% 93.8%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 79.0 7.12e-01 99.0% 98.6%
4lx3A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 69.0 7.07e-01 86.7% 100.0%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.82 78.0 6.93e-01 100.0% 98.6%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.81 75.0 6.58e-01 98.1% 100.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982797 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.92 88.0 7.70e-01 100.0% 99.3%
5030847 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 7.29e-01 100.0% 95.0%
4586920 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 85.0 7.25e-01 98.1% 98.7%
2445477 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 86.0 7.40e-01 100.0% 92.2%
4457379 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 7.57e-01 100.0% 94.5%
5002632 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 84.0 7.33e-01 98.1% 98.0%
5022295 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 86.0 7.18e-01 100.0% 98.8%
4997601 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 85.0 7.56e-01 99.0% 100.0%
3952464 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.90 86.0 7.53e-01 100.0% 94.5%
3282306 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 84.0 7.61e-01 98.1% 99.3%
4315406 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 85.0 6.88e-01 99.0% 100.0%
4944478 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.90 72.0 6.82e-01 82.9% 100.0%
4992473 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 85.0 7.06e-01 100.0% 93.5%
5013937 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 84.0 7.01e-01 98.1% 98.8%
4975578 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 85.0 6.04e-01 100.0% 57.8%
4997597 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 84.0 7.29e-01 99.0% 98.7%
5032319 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 84.0 7.29e-01 99.0% 100.0%
4940943 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 85.0 7.03e-01 100.0% 98.2%
4945569 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 85.0 7.25e-01 100.0% 97.4%
5065032 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 84.0 7.06e-01 100.0% 100.0%
4971400 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 84.0 5.87e-01 100.0% 53.2%
4993808 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 7.34e-01 99.0% 98.6%
4821446 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 70.0 6.65e-01 81.9% 99.2%
4975971 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 7.71e-01 100.0% 100.0%
4667152 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.88 84.0 7.13e-01 100.0% 97.5%
5012699 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 83.0 6.85e-01 98.1% 100.0%
4993813 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 84.0 7.09e-01 100.0% 98.8%
4565870 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 83.0 7.15e-01 100.0% 96.1%
4127166 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 82.0 7.13e-01 98.1% 99.3%
4342207 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 83.0 7.23e-01 100.0% 100.0%
4979524 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 83.0 6.09e-01 100.0% 98.8%
5030499 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 81.0 7.05e-01 97.1% 99.3%
3603738 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 81.0 7.22e-01 97.1% 98.6%
4322985 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.87 83.0 5.52e-01 100.0% 38.0%
4970868 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 71.0 6.69e-01 85.7% 100.0%
4979631 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 83.0 7.17e-01 100.0% 100.0%
4933756 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 82.0 7.29e-01 99.0% 100.0%
3603291 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 82.0 6.74e-01 100.0% 96.6%
4930925 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 81.0 7.27e-01 100.0% 99.3%
2323756 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 79.0 6.78e-01 98.1% 100.0%
4993732 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 83.0 7.68e-01 100.0% 98.4%
4940699 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 81.0 6.97e-01 100.0% 99.4%
4978364 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 70.0 6.75e-01 84.8% 100.0%
4152516 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 81.0 7.29e-01 99.0% 99.3%
4994372 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 80.0 7.57e-01 97.1% 100.0%
4979989 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 81.0 6.57e-01 100.0% 97.8%
1291738 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 71.0 7.01e-01 87.6% 100.0%
259963 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.84 79.0 7.12e-01 99.0% 98.6%
2701967 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 79.0 7.10e-01 99.0% 100.0%
4291841 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 78.0 6.57e-01 98.1% 100.0%
5066163 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 80.0 7.13e-01 100.0% 100.0%
4779324 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 69.0 7.07e-01 86.7% 100.0%
4404140 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 79.0 6.47e-01 100.0% 98.3%
5014852 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 79.0 6.97e-01 100.0% 97.9%
2553113 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 77.0 7.10e-01 99.0% 98.4%
4950409 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 76.0 6.56e-01 100.0% 97.4%
5065932 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 76.0 6.80e-01 100.0% 99.3%
4993871 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 72.0 7.02e-01 94.3% 90.4%
4932851 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.80 74.0 6.77e-01 100.0% 97.0%
4416649 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 69.0 6.07e-01 100.0% 97.9%