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MT161385.1__QJI52999.1__XccvBFoX4_gp45__00045

Bact-Vir

MT161385.1__QJI52999.1__XccvBFoX4_gp45__00045

Identity

Accession:
MT161385 ↗
Kingdom:
phage

Quality

58.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Foxquatrovirus› Xanthomonas_phage_FoX4

TaxID: 2723900

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-41
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.69 48.0 4.87e-01 82.9% 76.5%
2y8nB01 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 54.0 5.19e-01 100.0% 81.0%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.65 53.0 4.46e-01 100.0% 53.2%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 46.0 4.53e-01 82.9% 74.4%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.62 47.0 3.21e-01 91.4% 59.6%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.60 49.0 4.20e-01 100.0% 71.0%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.60 42.0 2.74e-01 77.1% 47.3%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 43.0 4.45e-01 91.4% 87.9%
4qp0A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 46.0 2.74e-01 100.0% 93.3%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.59 50.0 4.24e-01 100.0% 67.2%
1zymA01 3.50.30.10 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain 0.58 42.0 3.15e-01 94.3% 89.3%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 39.0 3.99e-01 77.1% 83.3%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 41.0 2.43e-01 91.4% 65.7%
1nigA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.55 42.0 2.90e-01 91.4% 80.8%
1w36B03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 38.0 2.31e-01 77.1% 11.0%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 41.0 2.75e-01 91.4% 82.9%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 2.77e-01 100.0% 79.1%
5eghB01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.55 42.0 2.59e-01 97.1% 21.3%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.54 39.0 2.88e-01 100.0% 66.4%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.54 43.0 2.67e-01 100.0% 21.0%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 43.0 3.03e-01 100.0% 72.8%
6g4gD01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.54 40.0 2.53e-01 100.0% 22.8%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 38.0 2.81e-01 94.3% 24.6%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 2.66e-01 97.1% 32.6%
1c4zA01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.53 41.0 2.84e-01 100.0% 34.4%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 44.0 3.85e-01 100.0% 70.2%
2ifcA01 1.10.580.10 Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 0.51 36.0 2.33e-01 97.1% 21.3%
2ebnA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 42.0 2.51e-01 100.0% 24.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3415332 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 56.0 5.37e-01 82.9% 80.0%
3543340 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.72 54.0 4.67e-01 82.9% 66.7%
3406467 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 52.0 4.83e-01 82.9% 62.2%
4278066 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.70 49.0 3.80e-01 82.9% 32.9%
5073392 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.69 48.0 3.50e-01 74.3% 97.9%
3503411 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 48.0 4.57e-01 80.0% 68.9%
3255203 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 44.0 4.31e-01 77.1% 55.0%
3317170 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.66 47.0 4.40e-01 82.9% 57.8%
4989659 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.64 44.0 3.06e-01 80.0% 20.0%
3563732 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.63 45.0 4.04e-01 80.0% 63.6%
3995904 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.63 49.0 3.63e-01 97.1% 33.3%
3260512 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.63 45.0 4.06e-01 80.0% 52.7%
5036669 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 48.0 3.52e-01 91.4% 42.0%
3400885 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 41.0 4.14e-01 82.9% 71.4%
4964086 2004.1.1.1218 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PilB3_C 0.60 44.0 2.45e-01 100.0% 5.8%
3621229 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.59 50.0 4.05e-01 100.0% 62.9%
3490493 708.1.1.9 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 0.59 40.0 2.60e-01 71.4% 20.0%
3935829 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.58 50.0 4.27e-01 100.0% 78.0%
3808136 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.58 49.0 3.71e-01 100.0% 51.1%
3940247 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.58 42.0 3.12e-01 91.4% 53.3%
3406356 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.57 48.0 3.86e-01 97.1% 52.9%
3221467 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.57 43.0 2.48e-01 85.7% 29.9%
3783957 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.56 43.0 3.27e-01 91.4% 52.6%
3720382 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.56 45.0 2.84e-01 97.1% 37.9%
4007589 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.56 38.0 2.57e-01 71.4% 23.2%
314827 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 46.0 2.59e-01 100.0% 43.5%
4331241 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 38.0 3.44e-01 74.3% 64.0%
4151293 7513.1.1.1 ↗ a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD 0.54 39.0 2.34e-01 85.7% 30.5%
4014158 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.54 42.0 2.55e-01 97.1% 24.1%
None — 0.54 37.0 2.80e-01 100.0% 25.2%
4552451 570.1.1.1 ↗ alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind 0.54 46.0 3.21e-01 100.0% 46.7%
5037891 2002.1.1.112 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_114 0.54 40.0 2.48e-01 100.0% 17.5%
4937420 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 42.0 2.38e-01 94.3% 20.2%
5023504 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 42.0 2.36e-01 94.3% 19.0%
3838562 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 37.0 3.35e-01 100.0% 49.1%
3039309 2003.1.5.91 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Reovirus_L2_MT2 0.52 41.0 2.55e-01 97.1% 33.0%
3717340 605.1.1.155 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.51 36.0 2.35e-01 100.0% 14.0%
5037203 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 36.0 2.13e-01 100.0% 13.6%
3483313 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.50 36.0 3.20e-01 77.1% 52.7%
3724437 327.11.2.44 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28723 0.50 35.0 3.21e-01 77.1% 100.0%