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MT162466.1__QIN96668.1__X__00033

Bact-Vir

MT162466.1__QIN96668.1__X__00033

Identity

Accession:
MT162466 ↗
Kingdom:
phage

Quality

69.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-60
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x1wO01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 58.0 4.95e-01 100.0% 60.0%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 54.0 4.81e-01 100.0% 61.4%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.66 55.0 3.86e-01 100.0% 85.4%
3bfoA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 49.0 4.36e-01 100.0% 56.5%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 56.0 4.73e-01 100.0% 58.8%
5hv6A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.64 58.0 4.43e-01 100.0% 94.6%
5edxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 54.0 4.46e-01 100.0% 67.5%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.63 42.0 3.71e-01 100.0% 48.2%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 55.0 4.30e-01 100.0% 64.2%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 4.18e-01 100.0% 54.2%
4iwxA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 54.0 4.33e-01 100.0% 69.4%
5jicA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 50.0 3.65e-01 98.3% 84.1%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.59 49.0 3.91e-01 100.0% 42.9%
4m8rA01 2.60.40.3920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 51.0 4.34e-01 100.0% 62.1%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 44.0 3.39e-01 81.4% 64.6%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 53.0 3.58e-01 100.0% 39.1%
8ediA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.12e-01 100.0% 59.3%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 51.0 4.13e-01 100.0% 69.6%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.24e-01 100.0% 67.0%
2yd1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.00e-01 100.0% 55.7%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 42.0 3.29e-01 79.7% 65.9%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 47.0 3.22e-01 100.0% 91.3%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 50.0 4.29e-01 100.0% 68.4%
3lohE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 3.83e-01 100.0% 74.0%
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 47.0 3.80e-01 98.3% 76.4%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.56 48.0 3.84e-01 100.0% 55.7%
1ej6A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.01e-01 100.0% 70.5%
2rflH00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 38.0 2.89e-01 74.6% 55.1%
4lwoB02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.55 44.0 3.26e-01 96.6% 98.4%
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 50.0 4.23e-01 100.0% 64.9%
3lp8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 48.0 3.67e-01 100.0% 68.8%
8oqxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 3.78e-01 96.6% 68.4%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.54 45.0 3.70e-01 100.0% 70.5%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 40.0 3.27e-01 83.1% 68.0%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 47.0 3.45e-01 100.0% 70.9%
1j20A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.54 49.0 3.28e-01 100.0% 65.3%
2a6pA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.53 44.0 3.23e-01 100.0% 97.9%
1vkzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 46.0 3.59e-01 100.0% 69.4%
2re2A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.53 45.0 3.69e-01 100.0% 57.6%
3ey5A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.15e-01 93.2% 41.3%
2f51A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 39.0 3.32e-01 91.5% 80.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4985428 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.75 67.0 6.09e-01 100.0% 94.9%
4952123 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.74 64.0 6.38e-01 100.0% 96.7%
3587814 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 58.0 4.71e-01 100.0% 61.7%
4947263 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.66 52.0 4.86e-01 88.1% 100.0%
4277361 302.2.1.1 a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small 0.66 56.0 4.32e-01 100.0% 59.4%
3630206 898.1.1.0 a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 0.65 54.0 4.18e-01 100.0% 73.0%
5037163 230.4.1.2 a+b two layers › T-fold › ApbE-like › ApbE-like › AbpE_bact 0.64 53.0 4.43e-01 100.0% 54.8%
3226502 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.63 56.0 4.20e-01 100.0% 53.1%
5015366 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.62 56.0 3.86e-01 100.0% 40.0%
5034209 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 5.07e-01 100.0% 93.3%
4281631 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.61 49.0 3.42e-01 89.8% 61.4%
3934853 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 55.0 4.62e-01 100.0% 60.0%
3553575 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 53.0 4.14e-01 100.0% 53.1%
3629263 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.61 51.0 3.63e-01 100.0% 39.5%
4967149 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 48.0 3.02e-01 89.8% 38.5%
3905520 11.1.1.317 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR-1-like_Ig-like 0.60 51.0 4.39e-01 100.0% 59.0%
5081623 206.1.3.119 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › LAL_C2 0.60 54.0 3.38e-01 100.0% 29.3%
5062623 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 54.0 3.71e-01 100.0% 40.0%
3737433 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.59 53.0 3.44e-01 100.0% 31.0%
4985499 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.59 52.0 3.60e-01 100.0% 42.5%
3787619 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.59 52.0 4.20e-01 100.0% 68.7%
5071931 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 46.0 3.44e-01 89.8% 61.9%
3919300 206.1.3.42 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPIP5K2_N 0.58 53.0 3.36e-01 100.0% 28.7%
3728236 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.58 52.0 3.35e-01 100.0% 29.3%
3691862 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.58 52.0 3.33e-01 100.0% 27.7%
5000069 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.58 51.0 3.57e-01 100.0% 39.5%
3988310 206.1.3.25 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 0.58 51.0 3.29e-01 100.0% 29.7%
5028326 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.58 46.0 3.29e-01 89.8% 62.1%
5017005 206.1.3.31 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RLAN 0.58 45.0 3.45e-01 89.8% 61.9%
4965457 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.58 52.0 3.52e-01 100.0% 35.7%
3365075 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.58 52.0 3.39e-01 100.0% 31.6%
4974741 304.125.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins 0.58 47.0 4.33e-01 100.0% 96.5%
3229807 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.57 47.0 4.34e-01 100.0% 68.8%
3350187 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.57 47.0 3.34e-01 100.0% 43.3%
4942749 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.57 44.0 3.15e-01 89.8% 61.5%
5005393 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.56 45.0 3.42e-01 91.5% 59.5%
4947761 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.56 43.0 3.05e-01 86.4% 58.0%
5004557 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.56 47.0 3.96e-01 100.0% 79.1%
5075866 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 45.0 4.21e-01 96.6% 100.0%
3962875 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.53 45.0 3.62e-01 100.0% 70.0%
3604107 210.1.1.4 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd 0.53 43.0 3.15e-01 100.0% 92.5%
3969156 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.53 47.0 3.53e-01 100.0% 66.9%
3838338 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 43.0 3.94e-01 100.0% 84.7%
3268409 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.52 37.0 3.23e-01 74.6% 100.0%
2475145 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.52 43.0 3.11e-01 100.0% 96.0%
3943969 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 40.0 2.79e-01 86.4% 72.3%
3982470 2.1.1.273 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1481 0.52 46.0 4.27e-01 100.0% 82.7%
4008119 5.1.5.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.52 46.0 4.26e-01 100.0% 82.7%
3283489 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.51 45.0 3.12e-01 100.0% 94.8%
159658 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.50 39.0 3.32e-01 91.5% 80.2%