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MT162466.1__QIN96782.1__X__00147

Bact-Vir

MT162466.1__QIN96782.1__X__00147

Identity

Accession:
MT162466 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Huanghaivirus› Synechococcus_phage_S-N03

TaxID: 2718943

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-76
PDB
Domain cluster: rep: BML_08042016_1_5m_scaffold_1_curated_closed_gap_prodigal-single.1__X__X__00137__D4-70
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hskA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.64 44.0 3.64e-01 72.5% 44.1%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 41.0 3.91e-01 87.0% 62.5%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 37.0 3.33e-01 94.2% 44.4%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 38.0 3.39e-01 98.6% 44.2%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 46.0 3.07e-01 94.2% 59.6%
1zr6A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 40.0 3.24e-01 76.8% 39.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 4.04e-01 82.6% 80.3%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 44.0 2.68e-01 91.3% 92.9%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 36.0 3.39e-01 98.6% 54.5%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 39.0 3.67e-01 78.3% 76.7%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 42.0 3.70e-01 95.7% 58.7%
3szpB02 3.40.190.290 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.52 36.0 2.78e-01 76.8% 94.5%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.52 33.0 3.83e-01 92.8% 97.8%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.51 42.0 4.06e-01 88.4% 84.2%
1wdkC01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 36.0 2.66e-01 76.8% 35.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4179539 1.1.2.21 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central+PolC_DP2_cat 0.63 48.0 3.42e-01 82.6% 28.7%
4110075 1.1.2.21 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central+PolC_DP2_cat 0.61 47.0 3.30e-01 82.6% 27.9%
3637393 3792.1.1.2 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.61 44.0 4.02e-01 100.0% 57.8%
4304977 1.1.2.21 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central+PolC_DP2_cat 0.61 49.0 2.94e-01 88.4% 82.7%
4029392 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.61 43.0 3.16e-01 73.9% 89.7%
3695902 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.60 49.0 3.54e-01 89.9% 60.5%
3941506 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.58 45.0 3.02e-01 89.9% 87.5%
4946461 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.57 49.0 3.43e-01 95.7% 67.7%
4063927 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 46.0 3.36e-01 89.9% 58.9%
4226244 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 46.0 3.87e-01 89.9% 99.1%
4120000 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.55 46.0 3.79e-01 91.3% 99.2%
4089543 304.24.1.21 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.55 45.0 3.24e-01 89.9% 60.0%
3285863 375.1.1.49 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RbpA 0.55 36.0 3.20e-01 100.0% 47.0%
3678933 7590.1.1.3 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi,ArgoMid 0.55 38.0 2.84e-01 94.2% 27.6%
4064436 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.55 45.0 3.84e-01 89.9% 100.0%
4971115 2002.4.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › QRPTase_C 0.53 38.0 2.52e-01 75.4% 95.6%
4241460 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.51 39.0 3.29e-01 88.4% 75.6%