←Back to structures
MT188664.1__QJD55402.1__vBVipaK_00004__00004
Bact-VirMT188664.1__QJD55402.1__vBVipaK_00004__00004
Identity
- Accession:
- MT188664 ↗
- Kingdom:
- phage
Quality
96.1
mean pLDDT
Taxonomy
Loebvirae›
Hofneiviricota›
Faserviricetes›
Tubulavirales›
Inoviridae›
Versovirus›
Vibrio_phage_vB_VipaK
TaxID: 2729570
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-65
Domain cluster:
rep: KY653118.1__ARM67923.1__X__00036__D2-63
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2h29A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.63 | 47.0 | 3.46e-01 | 84.1% | 67.0% |
| 5lltA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 47.0 | 3.36e-01 | 84.1% | 62.0% |
| 4iilA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 47.0 | 3.52e-01 | 88.9% | 53.1% |
| 1rm6A01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.60 | 41.0 | 3.36e-01 | 95.2% | 37.8% |
| 4nzpA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 44.0 | 3.58e-01 | 85.7% | 73.2% |
| 3lovA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 46.0 | 3.55e-01 | 93.7% | 61.8% |
| 3vc5A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.56 | 44.0 | 2.96e-01 | 85.7% | 27.2% |
| 2wyhB01 | 3.40.50.11160 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 38.0 | 3.37e-01 | 76.2% | 86.5% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.53 | 42.0 | 3.62e-01 | 93.7% | 74.6% |
| 1zbrA00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.53 | 43.0 | 2.71e-01 | 95.2% | 16.8% |
| 3kk7A01 | 3.30.420.400 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.52 | 37.0 | 3.18e-01 | 76.2% | 75.2% |
| 1y8qB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 41.0 | 2.92e-01 | 92.1% | 49.5% |
| 3dnfB01 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.52 | 40.0 | 3.63e-01 | 93.7% | 70.0% |
| 5cdvA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.52 | 37.0 | 3.10e-01 | 79.4% | 87.1% |
| 2cunA02 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.51 | 40.0 | 2.94e-01 | 92.1% | 86.1% |
| 3hx3A02 | 3.40.525.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain | 0.51 | 43.0 | 3.22e-01 | 100.0% | 52.7% |
| 3lubA01 | 3.40.50.10310 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Creatininase | 0.51 | 38.0 | 2.74e-01 | 90.5% | 45.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5048177 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.62 | 46.0 | 4.74e-01 | 82.5% | 96.7% |
| 4234167 | 231.1.1.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1 | 0.59 | 41.0 | 2.67e-01 | 93.7% | 15.9% |
| 3605866 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.59 | 44.0 | 2.78e-01 | 87.3% | 23.1% |
| 4223234 | 3068.1.1.1 ↗ | a+b complex topology › Flagellar protein FlgA N-terminal domain-like › Flagellar protein FlgA N-terminal domain-like › Flagellar protein FlgA N-terminal domain-like › SporV_AA | 0.59 | 43.0 | 3.90e-01 | 81.0% | 90.0% |
| 3717573 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.59 | 44.0 | 2.75e-01 | 87.3% | 22.1% |
| 3241239 | 2003.1.5.213 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS, tRNA_U5-meth_tr | 0.54 | 40.0 | 2.56e-01 | 87.3% | 25.8% |