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MT188704.1__QIV65772.1__Cp1R7AA1_115__00089

Bact-Vir

MT188704.1__QIV65772.1__Cp1R7AA1_115__00089

Identity

Accession:
MT188704 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesorhizobium_phage_Cp1R7A-A1

TaxID: 2723894

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 222-330
PDB
Domain cluster: rep: IMGVR_UViG_3300015214_002962-3300015214-Ga0172382_100065621__D24-131
D2 medium residues 4-106
PDB
Domain cluster: rep: ON189047.1__URA07152.1__Mallos_BL60044__00044__D4-113
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10983.14 best DUF2793 65.9 3.30e-18 77.7% 97.7%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 26.0 3.20e-01 81.6% 75.0%
8bveA02 2.170.190.11 Mainly Beta › Beta Complex › Molybdopterin biosynthesis moeA protein; domain 3 › Molybdopterin biosynthesis moea protein, domain 3. 0.52 32.0 3.47e-01 86.4% 74.4%
1rjaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 36.0 3.66e-01 79.6% 75.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002640 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.66 31.0 4.31e-01 95.1% 94.0%
3627795 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 32.0 3.48e-01 81.6% 67.1%
4631652 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.54 41.0 3.13e-01 78.6% 94.4%
3566967 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.54 33.0 3.29e-01 83.5% 58.1%
4955882 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.53 38.0 3.56e-01 75.7% 78.5%
D3 medium residues 188-219
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.64 49.0 3.29e-01 87.5% 28.7%
1bkcE00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.62 43.0 2.62e-01 78.1% 22.7%
2q7dA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 45.0 2.89e-01 100.0% 86.5%
1wysA00 4.10.1110.10 Few Secondary Structures › Irregular › Zf-an1 domain › AN1-like Zinc finger 0.58 41.0 3.39e-01 100.0% 36.0%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 3.61e-01 100.0% 37.0%
5efrA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 41.0 3.32e-01 84.4% 97.3%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 43.0 3.26e-01 90.6% 80.0%
3s40A01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.57 43.0 3.06e-01 100.0% 54.9%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.47e-01 100.0% 37.0%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 42.0 3.15e-01 100.0% 62.0%
1z2qA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 41.0 3.32e-01 100.0% 38.1%
1wfkA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 40.0 3.28e-01 100.0% 37.7%
1kloA01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.55 39.0 3.43e-01 100.0% 37.7%
2ghfA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 40.0 3.20e-01 96.9% 86.5%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 42.0 3.27e-01 87.5% 85.9%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 41.0 2.85e-01 87.5% 59.7%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 39.0 3.31e-01 87.5% 44.6%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.54 40.0 3.28e-01 100.0% 52.6%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.53 36.0 2.91e-01 87.5% 86.5%
1ze3D00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.52 37.0 2.69e-01 87.5% 69.0%
4bzaA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 36.0 2.94e-01 87.5% 88.5%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 36.0 2.82e-01 100.0% 92.7%
3pe5A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.51 38.0 2.35e-01 100.0% 71.5%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4002693 387.1.7.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein 0.67 48.0 4.50e-01 78.1% 67.5%
3629517 11.2.1.57 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28126 0.64 44.0 2.73e-01 75.0% 17.4%
3237389 387.1.5.24 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Lustrin_cystein 0.64 44.0 4.22e-01 75.0% 80.0%
3940037 389.1.1.108 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29136 0.63 44.0 4.13e-01 81.2% 60.0%
3929491 387.1.7.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein 0.62 43.0 3.98e-01 75.0% 80.0%
3385806 3702.1.1.1 ↗ beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › PBP_dimer 0.62 51.0 3.92e-01 96.9% 47.5%
3938927 387.1.7.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein 0.61 42.0 4.03e-01 71.9% 76.9%
3483119 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.61 54.0 5.00e-01 100.0% 95.0%
3579964 389.1.1.16 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 0.61 46.0 4.22e-01 100.0% 62.2%
3704117 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.61 44.0 3.56e-01 100.0% 37.3%
3993237 387.1.5.24 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Lustrin_cystein 0.61 42.0 3.35e-01 75.0% 48.6%
3244492 389.1.1.16 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 0.60 44.0 4.11e-01 87.5% 68.9%
3502807 389.1.1.95 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Mua-3 0.59 41.0 3.58e-01 81.2% 40.0%
3621421 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.59 45.0 4.18e-01 93.8% 64.4%
3613411 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.59 44.0 3.06e-01 100.0% 56.0%
3935996 59.1.1.9 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF 0.57 41.0 3.09e-01 87.5% 84.8%
3856452 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.57 39.0 2.51e-01 84.4% 13.5%
3593722 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 41.0 3.60e-01 100.0% 48.3%
2409922 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.56 42.0 3.33e-01 93.8% 42.9%
3263261 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 39.0 3.81e-01 100.0% 65.1%
3509101 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.56 42.0 3.86e-01 93.8% 72.0%
3865964 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.56 38.0 3.02e-01 84.4% 35.8%
3219700 387.1.5.24 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Lustrin_cystein 0.56 40.0 3.71e-01 81.2% 63.6%
3594333 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.55 38.0 3.81e-01 87.5% 77.5%
3250496 388.1.1.0 ↗ few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like 0.55 39.0 3.88e-01 87.5% 71.4%
4183108 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.55 45.0 2.88e-01 100.0% 48.3%
3489181 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 39.0 3.35e-01 96.9% 42.9%
2714469 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.55 41.0 3.30e-01 93.8% 42.3%
3881136 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 38.0 3.53e-01 78.1% 54.0%
3922987 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.55 38.0 3.34e-01 87.5% 53.8%
3607253 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.55 37.0 3.04e-01 84.4% 40.0%
3597323 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 40.0 3.24e-01 100.0% 37.3%
3637895 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.54 41.0 3.19e-01 100.0% 75.8%
1731820 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.54 40.0 3.17e-01 87.5% 90.0%
3509031 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.54 38.0 3.68e-01 84.4% 62.5%
1088466 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.54 39.0 3.31e-01 87.5% 44.6%
3599415 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 38.0 3.22e-01 100.0% 40.0%
3301323 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.18e-01 90.6% 80.0%
3968414 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.53 39.0 2.82e-01 87.5% 77.3%
3898766 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.53 37.0 3.43e-01 100.0% 52.7%
3739083 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.53 36.0 3.11e-01 90.6% 40.0%
3975395 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.52 37.0 2.63e-01 87.5% 65.6%
3231491 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.52 37.0 2.99e-01 100.0% 75.8%
3306570 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.52 38.0 3.07e-01 100.0% 80.0%
4544763 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.52 42.0 2.90e-01 100.0% 33.8%
3191529 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 36.0 2.48e-01 87.5% 83.1%
4006144 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.51 36.0 2.78e-01 87.5% 80.0%
3503883 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 38.0 3.78e-01 96.9% 90.0%
5062681 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.51 39.0 3.10e-01 100.0% 77.6%
3594275 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.51 37.0 2.96e-01 100.0% 78.9%
3335720 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.50 36.0 2.93e-01 100.0% 77.8%
3610294 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.50 38.0 3.01e-01 100.0% 77.8%