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MT188704.1__QIV65782.1__Cp1R7AA1_135__00108

Bact-Vir

MT188704.1__QIV65782.1__Cp1R7AA1_135__00108

Identity

Accession:
MT188704 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-72
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.72 50.0 4.47e-01 72.5% 88.7%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 58.0 5.31e-01 98.6% 98.9%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.66 45.0 4.68e-01 71.0% 100.0%
5jcpB01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.65 50.0 3.71e-01 85.5% 79.0%
2vtyA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.64 47.0 3.76e-01 79.7% 47.9%
2ooeA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 51.0 3.79e-01 92.8% 34.2%
3qkyA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 52.0 3.65e-01 100.0% 39.4%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.62 44.0 3.76e-01 76.8% 65.0%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 48.0 3.28e-01 91.3% 26.6%
1wy6A00 1.25.40.350 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 51.0 4.05e-01 100.0% 43.4%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.60 43.0 3.81e-01 76.8% 90.6%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.60 51.0 4.41e-01 100.0% 86.0%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 50.0 4.24e-01 100.0% 57.3%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.59 43.0 3.99e-01 79.7% 62.8%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 47.0 4.32e-01 94.2% 72.9%
1hssA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.57 45.0 3.89e-01 87.0% 86.5%
3zxsC02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 40.0 3.17e-01 84.1% 44.2%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.51 38.0 3.56e-01 81.2% 71.9%
1uddA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.51 43.0 3.14e-01 98.6% 74.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3503297 109.4.1.470 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 0.69 60.0 4.66e-01 100.0% 71.9%
3781815 109.4.1.1561 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_LAA1_C 0.68 57.0 4.39e-01 94.2% 52.5%
3600289 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 3.89e-01 98.6% 25.6%
3259837 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.67 56.0 3.53e-01 100.0% 21.6%
4817097 109.4.1.79 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Bystin 0.65 56.0 4.35e-01 100.0% 56.1%
3831040 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.64 54.0 4.07e-01 100.0% 42.1%
3608246 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 44.0 4.86e-01 73.9% 96.4%
3328963 109.4.1.1262 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.63 52.0 3.97e-01 97.1% 40.0%
3477347 109.4.1.1197 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TNPO3_IPO13_4th 0.63 54.0 3.56e-01 100.0% 51.7%
3642319 109.4.1.1305 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long, TPR_24 0.62 51.0 3.33e-01 95.7% 21.8%
3871158 109.4.1.314 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PRP1_N 0.61 50.0 4.21e-01 95.7% 52.5%
4027534 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 4.11e-01 100.0% 60.7%
3401881 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 4.03e-01 100.0% 56.7%
3192660 509.1.1.9 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.54 41.0 3.79e-01 87.0% 74.7%
3739492 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.54 40.0 3.23e-01 79.7% 43.7%
4554674 138.1.1.0 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.52 41.0 3.52e-01 87.0% 53.1%
D2 high residues 80-163
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4eyyQ02 3.20.170.50 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Dot/Icm secretion system IcmQ, C-terminal domain 0.70 55.0 5.05e-01 86.9% 86.0%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 33.0 2.43e-01 100.0% 20.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 28.0 3.49e-01 95.2% 79.2%
1p3hB00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.56 44.0 4.23e-01 96.4% 72.4%
3etbL00 2.60.40.810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 3.95e-01 92.9% 89.5%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 31.0 3.36e-01 100.0% 64.7%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.57e-01 91.7% 62.0%
6mrc100 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.54 40.0 3.77e-01 91.7% 66.0%
3kn6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 29.0 3.25e-01 88.1% 67.7%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 33.0 3.39e-01 95.2% 63.1%
2vn4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.79e-01 92.9% 63.2%
2b39A13 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 42.0 3.62e-01 91.7% 69.9%
6rarI01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 42.0 3.23e-01 90.5% 44.1%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.44e-01 91.7% 74.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4859645 237.1.1.3 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Enterotoxin_a 0.79 66.0 4.70e-01 89.3% 55.8%
4865028 237.1.1.24 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Scabin-like 0.79 67.0 5.78e-01 90.5% 88.8%
3908660 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.78 73.0 5.88e-01 100.0% 83.3%
5077692 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.76 70.0 6.44e-01 100.0% 95.2%
3176205 237.1.1.37 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PF27671 0.75 69.0 4.88e-01 100.0% 67.1%
3274727 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.75 67.0 5.41e-01 96.4% 76.0%
1713372 237.1.1.20 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Ntox46 0.70 62.0 4.96e-01 97.6% 65.6%
1145920 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 31.0 3.18e-01 97.6% 49.4%
3807329 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.38e-01 89.3% 70.8%
3593214 4052.1.1.0 beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.58 41.0 4.17e-01 95.2% 76.2%
5035744 2008.1.1.77 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.58 41.0 3.67e-01 98.8% 50.4%
4941925 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 34.0 3.76e-01 85.7% 75.0%
4011475 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 43.0 3.46e-01 100.0% 41.1%
4125766 5099.1.1.1 beta sandwiches › Ig-like domain in anthrax protective antigen › Ig-like domain in anthrax protective antigen › Ig-like domain in anthrax protective antigen › PA_Ig-like 0.55 46.0 3.73e-01 94.0% 80.0%
4952123 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.52 36.0 4.08e-01 95.2% 100.0%
4189981 2008.1.1.37 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NaeI 0.51 39.0 3.17e-01 85.7% 39.5%
4990957 2.1.1.190 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Nre_N 0.51 44.0 3.83e-01 100.0% 93.6%
5037737 2.1.1.190 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Nre_N 0.50 43.0 3.55e-01 100.0% 73.9%
D3 high residues 182-243
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.77 55.0 4.79e-01 75.8% 64.1%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 57.0 5.17e-01 95.2% 78.3%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.64 57.0 4.54e-01 100.0% 62.9%
2xgjA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.64 56.0 3.86e-01 98.4% 62.8%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.63 47.0 4.40e-01 82.3% 67.1%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.63 47.0 4.21e-01 83.9% 91.6%
3craB01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.62 51.0 4.52e-01 88.7% 68.6%
4bujE03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.61 54.0 3.70e-01 100.0% 48.4%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 52.0 3.71e-01 93.5% 70.3%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 51.0 3.83e-01 93.5% 82.4%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 46.0 3.98e-01 98.4% 58.2%
4f5cA04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.56 47.0 3.06e-01 100.0% 26.5%
2pa4A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 47.0 3.09e-01 100.0% 23.5%
3d31A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 2.60e-01 98.4% 20.3%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.52 40.0 3.19e-01 87.1% 66.7%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.51 44.0 3.78e-01 98.4% 85.7%
1eteA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 37.0 3.05e-01 83.9% 53.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4262515 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.75 58.0 4.99e-01 85.5% 73.0%
3742733 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.73 57.0 4.93e-01 85.5% 73.5%
4024825 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 54.0 3.87e-01 95.2% 29.6%
3177942 109.4.1.510 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HbrB 0.68 57.0 3.80e-01 96.8% 26.1%
3244940 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.67 59.0 5.19e-01 96.8% 77.8%
3783175 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 61.0 3.98e-01 98.4% 55.4%
1261672 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.66 58.0 5.08e-01 96.8% 76.1%
5043430 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.66 58.0 5.42e-01 96.8% 84.0%
3210969 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.66 57.0 4.93e-01 95.2% 70.5%
4016845 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.66 58.0 5.10e-01 96.8% 77.8%
4990623 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.66 57.0 5.46e-01 95.2% 84.3%
4959463 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.65 56.0 5.20e-01 96.8% 83.7%
4929003 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.64 56.0 4.94e-01 96.8% 74.4%
5013782 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.64 56.0 5.25e-01 96.8% 85.3%
4025502 4156.1.1.3 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DSHCT 0.62 53.0 3.96e-01 95.2% 85.8%
3681307 109.4.1.1266 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB 0.60 51.0 3.19e-01 100.0% 33.0%