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MT188704.1__QIV65807.1__Cp1R7AA1_060__00060

Bact-Vir

MT188704.1__QIV65807.1__Cp1R7AA1_060__00060

Identity

Accession:
MT188704 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesorhizobium_phage_Cp1R7A-A1

TaxID: 2723894

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-105
PDB
Domain cluster: rep: MW584202.1__QSM04724.1__PROPHIGD54-2_146__00124__D4-75
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 42.0 3.24e-01 79.4% 88.5%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 43.0 3.57e-01 84.5% 94.0%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 38.0 3.31e-01 75.3% 83.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3823787 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.65 47.0 4.21e-01 76.3% 75.7%
4537756 330.1.1.25 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26980 0.61 33.0 3.50e-01 100.0% 60.0%
1826875 330.13.1.1 ↗ a+b two layers › dsRBD-like › dGTP triphosphohydrolase inhibitor › dGTP triphosphohydrolase inhibitor › T7-like_gp12 0.60 32.0 3.45e-01 96.9% 58.8%
3824506 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 42.0 3.61e-01 79.4% 86.1%
3439529 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 42.0 3.58e-01 80.4% 86.1%
3934027 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.56 42.0 3.44e-01 80.4% 81.1%
3573772 2484.1.1.222 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.55 42.0 3.47e-01 80.4% 74.1%
4255284 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.54 42.0 3.26e-01 83.5% 88.9%
3923456 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.53 38.0 3.24e-01 76.3% 84.1%
3988130 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.52 40.0 3.77e-01 84.5% 92.8%
3609894 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 44.0 3.64e-01 91.8% 78.6%
5011750 231.1.4.1 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain › Hydantoinase_B 0.52 31.0 2.82e-01 97.9% 42.2%
4032398 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 37.0 3.45e-01 77.3% 91.5%
3590547 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 38.0 3.48e-01 77.3% 93.1%
5047435 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.68e-01 88.7% 92.4%
4109482 223.1.1.182 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3369 0.51 42.0 3.52e-01 89.7% 73.5%
3081033 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.50 36.0 3.35e-01 75.3% 82.7%
3452167 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 35.0 3.19e-01 72.2% 96.9%
None — 0.50 38.0 3.00e-01 82.5% 94.2%
D2 high residues 112-155
PDB