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MT188704.1__QIV65813.1__Cp1R7AA1_189__00162
Bact-VirMT188704.1__QIV65813.1__Cp1R7AA1_189__00162
Identity
- Accession:
- MT188704 ↗
- Kingdom:
- phage
Quality
64.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-66
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.79 | 45.0 | 2.92e-01 | 100.0% | 14.6% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.73 | 59.0 | 4.06e-01 | 90.3% | 37.4% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 51.0 | 4.30e-01 | 79.0% | 64.2% |
| 1m2vB03 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.69 | 48.0 | 4.87e-01 | 74.2% | 83.9% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 4.05e-01 | 85.5% | 52.3% |
| 7sf8A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.66 | 47.0 | 3.08e-01 | 83.9% | 19.1% |
| 1tvzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.65 | 43.0 | 3.27e-01 | 79.0% | 28.6% |
| 2nutA02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.65 | 47.0 | 4.78e-01 | 77.4% | 78.7% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 47.0 | 3.96e-01 | 79.0% | 53.2% |
| 2nutB02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.64 | 42.0 | 4.28e-01 | 72.6% | 67.7% |
| 2xadA00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.64 | 44.0 | 2.87e-01 | 93.5% | 17.4% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.63 | 50.0 | 4.82e-01 | 91.9% | 77.8% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.63 | 42.0 | 4.41e-01 | 71.0% | 100.0% |
| 1a6zA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.63 | 49.0 | 3.58e-01 | 87.1% | 33.0% |
| 2kqrA01 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.61 | 43.0 | 4.09e-01 | 74.2% | 90.5% |
| 3gwiA00 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.61 | 42.0 | 3.06e-01 | 71.0% | 73.8% |
| 2k5cA00 | 3.10.20.830 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bifunctional heparan sulphate n-deacetylase/n-sulphotransferase | 0.60 | 45.0 | 4.15e-01 | 85.5% | 85.2% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 45.0 | 3.00e-01 | 79.0% | 30.7% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.60 | 46.0 | 3.36e-01 | 83.9% | 61.2% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 42.0 | 3.66e-01 | 77.4% | 80.0% |
| 7febA03 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.57 | 35.0 | 3.05e-01 | 77.4% | 41.3% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.57 | 44.0 | 4.20e-01 | 87.1% | 97.4% |
| 4zyaB00 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.55 | 41.0 | 3.88e-01 | 80.6% | 89.5% |
| 4fleA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 40.0 | 2.93e-01 | 80.6% | 63.1% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 45.0 | 3.97e-01 | 95.2% | 72.7% |
| 3ifrB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 46.0 | 3.20e-01 | 100.0% | 64.9% |
| 4q6rA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 41.0 | 3.21e-01 | 80.6% | 91.6% |
| 2lxwA00 | 6.10.250.1730 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 35.0 | 3.70e-01 | 90.3% | 74.5% |
| 8fazD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.55e-01 | 74.2% | 28.6% |
| 1e29A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.53 | 37.0 | 2.96e-01 | 75.8% | 72.6% |
| 4zohA05 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.52 | 45.0 | 3.43e-01 | 95.2% | 54.1% |
| 2jiiA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 41.0 | 2.91e-01 | 88.7% | 29.0% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 2.98e-01 | 71.0% | 46.1% |
| 2iqcA00 | 1.25.40.490 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 43.0 | 3.20e-01 | 95.2% | 85.5% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.52 | 44.0 | 3.31e-01 | 98.4% | 66.9% |
| 1gu2A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.51 | 39.0 | 3.18e-01 | 85.5% | 69.4% |
| 1xfjA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.50 | 42.0 | 2.87e-01 | 98.4% | 50.0% |
| 4bgdA08 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 36.0 | 2.54e-01 | 77.4% | 26.1% |
| 4gczB03 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 40.0 | 2.96e-01 | 87.1% | 39.1% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3172862 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.75 | 46.0 | 3.01e-01 | 88.7% | 14.7% |
| 3177523 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.74 | 51.0 | 3.54e-01 | 72.6% | 78.0% |
| 3267186 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.73 | 61.0 | 5.48e-01 | 91.9% | 82.4% |
| 3685260 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.70 | 40.0 | 2.63e-01 | 100.0% | 14.0% |
| 1210727 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.69 | 48.0 | 4.33e-01 | 74.2% | 60.5% |
| 4550724 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.68 | 57.0 | 3.47e-01 | 90.3% | 15.6% |
| 5065686 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.68 | 47.0 | 3.34e-01 | 72.6% | 77.2% |
| 4663376 | 3593.1.1.1 ↗ | a+b complex topology › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › CagA_N | 0.67 | 49.0 | 3.01e-01 | 77.4% | 76.9% |
| 4011521 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 48.0 | 4.53e-01 | 77.4% | 62.7% |
| 3658365 | 3543.1.1.4 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 | 0.67 | 50.0 | 3.19e-01 | 79.0% | 18.9% |
| 3601077 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.66 | 46.0 | 4.47e-01 | 75.8% | 64.3% |
| 3272721 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 45.0 | 3.62e-01 | 71.0% | 76.0% |
| 3999149 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.66 | 46.0 | 2.74e-01 | 72.6% | 10.6% |
| 3708692 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.65 | 47.0 | 3.44e-01 | 77.4% | 30.3% |
| 3584535 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.65 | 49.0 | 3.00e-01 | 82.3% | 67.8% |
| 5068674 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.65 | 44.0 | 3.05e-01 | 71.0% | 77.5% |
| 3410018 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.65 | 55.0 | 3.33e-01 | 91.9% | 63.5% |
| 3362626 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.65 | 45.0 | 4.28e-01 | 74.2% | 64.0% |
| 3277618 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 50.0 | 4.65e-01 | 83.9% | 66.7% |
| 4374415 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.64 | 45.0 | 4.30e-01 | 77.4% | 61.3% |
| 165690 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.64 | 45.0 | 4.81e-01 | 74.2% | 94.2% |
| 3981584 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.64 | 44.0 | 3.16e-01 | 71.0% | 71.2% |
| 3808136 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.64 | 46.0 | 4.11e-01 | 77.4% | 58.9% |
| 3784092 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.64 | 46.0 | 4.40e-01 | 82.3% | 65.3% |
| 3303403 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.63 | 46.0 | 3.65e-01 | 77.4% | 40.8% |
| 3742502 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.63 | 46.0 | 4.11e-01 | 79.0% | 57.8% |
| 3319227 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.63 | 43.0 | 4.18e-01 | 72.6% | 67.1% |
| 3176105 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.61 | 46.0 | 2.92e-01 | 80.6% | 17.2% |
| 4208157 | 5069.1.2.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Respiratory nitrate reductase 1 gamma chain › Nitrate_red_gam | 0.61 | 50.0 | 3.24e-01 | 88.7% | 60.7% |
| 3324543 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.61 | 48.0 | 3.10e-01 | 85.5% | 19.3% |
| 5057901 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.61 | 40.0 | 4.33e-01 | 77.4% | 84.0% |
| 5051266 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.60 | 47.0 | 3.11e-01 | 85.5% | 22.7% |
| 5006613 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.59 | 47.0 | 2.76e-01 | 83.9% | 22.0% |
| 3507936 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 43.0 | 3.10e-01 | 79.0% | 32.6% |
| 4381621 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.57 | 50.0 | 3.51e-01 | 96.8% | 58.5% |
| 3175295 | 109.4.1.334 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MNE1 | 0.57 | 50.0 | 3.21e-01 | 96.8% | 60.8% |
| 4970541 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 3.88e-01 | 88.7% | 85.0% |
| 3732521 | 7579.1.1.34 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Tannase | 0.56 | 45.0 | 2.67e-01 | 90.3% | 20.4% |
| 3703451 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.56 | 39.0 | 3.55e-01 | 75.8% | 92.2% |
| 4026266 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.56 | 50.0 | 3.25e-01 | 100.0% | 24.2% |
| 3200288 | 192.20.1.0 ↗ | alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD | 0.55 | 50.0 | 4.01e-01 | 98.4% | 83.3% |
| 3600710 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 48.0 | 3.23e-01 | 100.0% | 95.5% |
| 5006819 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.54 | 40.0 | 3.51e-01 | 80.6% | 83.2% |
| 3471523 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.54 | 47.0 | 3.07e-01 | 96.8% | 61.8% |
| 3936036 | 375.10.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol | 0.52 | 39.0 | 3.19e-01 | 80.6% | 47.0% |
| 3658440 | 386.1.1.26 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 | 0.51 | 35.0 | 3.70e-01 | 71.0% | 92.7% |
| 4454337 | 5068.1.1.1 ↗ | alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Cytochrom_B_C | 0.51 | 42.0 | 3.30e-01 | 95.2% | 95.9% |
| 4028213 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 42.0 | 3.29e-01 | 93.5% | 76.3% |
D2
medium
residues 71-154