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MT188704.1__QIV65911.1__Cp1R7AA1_158__00131

Bact-Vir

MT188704.1__QIV65911.1__Cp1R7AA1_158__00131

Identity

Accession:
MT188704 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesorhizobium_phage_Cp1R7A-A1

TaxID: 2723894

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-62
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 71.0 6.67e-01 100.0% 89.5%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 5.87e-01 100.0% 88.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.12e-01 100.0% 63.8%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 59.0 4.23e-01 100.0% 34.8%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 58.0 4.29e-01 100.0% 39.7%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.68 58.0 4.28e-01 100.0% 38.0%
4ngdA02 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.67 56.0 4.33e-01 100.0% 80.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 55.0 5.47e-01 100.0% 91.7%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 4.90e-01 100.0% 74.3%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 5.36e-01 93.5% 89.6%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 52.0 4.61e-01 100.0% 83.3%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 48.0 3.75e-01 91.3% 76.3%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.61 46.0 4.09e-01 87.0% 83.8%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 51.0 4.96e-01 100.0% 87.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.61 50.0 4.20e-01 97.8% 95.5%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.26e-01 100.0% 52.8%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 44.0 3.08e-01 82.6% 23.3%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 48.0 3.70e-01 100.0% 41.6%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 50.0 4.54e-01 100.0% 77.3%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 41.0 2.43e-01 73.9% 18.2%
5cxbA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 2.92e-01 100.0% 90.9%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 2.99e-01 95.7% 19.1%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.59 46.0 3.76e-01 100.0% 55.0%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 3.91e-01 100.0% 51.1%
1qwrB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 40.0 2.66e-01 78.3% 80.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.17e-01 100.0% 77.8%
2ahoB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.47e-01 80.4% 85.0%
2mctA00 2.60.40.4250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.47e-01 93.5% 44.1%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.61e-01 100.0% 76.8%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 40.0 3.13e-01 84.8% 88.1%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 40.0 2.98e-01 87.0% 65.9%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.30e-01 100.0% 73.0%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.51 40.0 2.55e-01 100.0% 49.7%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.10e-01 100.0% 70.1%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.21e-01 100.0% 85.2%
3x29A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.50 42.0 2.96e-01 100.0% 68.1%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 39.0 3.21e-01 100.0% 50.5%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3482225 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.82 74.0 5.25e-01 100.0% 39.2%
3751502 4.1.1.365 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.80 71.0 6.14e-01 100.0% 72.9%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.79 70.0 4.64e-01 100.0% 33.1%
3796759 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.77 66.0 5.19e-01 100.0% 47.4%
3399912 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 68.0 5.87e-01 100.0% 77.1%
5082913 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.75 50.0 3.19e-01 80.4% 15.2%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.73 60.0 5.62e-01 100.0% 74.1%
3290647 3174.4.1.1 ↗ beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain › DUF4265 0.71 59.0 5.22e-01 95.7% 85.7%
4422251 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.71 57.0 5.62e-01 97.8% 84.0%
146634 4.1.1.119 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5606 0.71 60.0 5.91e-01 100.0% 89.8%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.70 59.0 5.60e-01 100.0% 80.0%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.08e-01 100.0% 62.5%
171891 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.68 60.0 5.67e-01 100.0% 83.6%
4261492 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.68 58.0 4.20e-01 100.0% 36.3%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 57.0 5.24e-01 100.0% 73.3%
5053934 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.50e-01 100.0% 47.8%
3554100 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.68 58.0 4.24e-01 100.0% 85.4%
5047163 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.68 48.0 3.18e-01 78.3% 17.1%
3709029 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.31e-01 100.0% 78.3%
5073258 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.66 42.0 2.73e-01 73.9% 14.0%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.66 56.0 4.38e-01 100.0% 44.8%
3620554 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 4.52e-01 100.0% 53.7%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.79e-01 100.0% 62.5%
3539509 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.66 54.0 3.42e-01 100.0% 17.9%
3980140 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.66 56.0 4.07e-01 100.0% 36.3%
3963980 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.65 56.0 4.01e-01 100.0% 34.3%
4277582 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.65 56.0 4.05e-01 100.0% 37.0%
4029739 9.8.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.64 53.0 4.04e-01 100.0% 90.0%
4432348 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 49.0 4.50e-01 100.0% 66.2%
2784372 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.60 49.0 4.61e-01 100.0% 76.2%
3970579 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.60 48.0 3.56e-01 100.0% 36.0%
3341084 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.60 51.0 4.06e-01 100.0% 92.0%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.54e-01 100.0% 80.0%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.60 45.0 4.37e-01 100.0% 74.1%
5040936 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 46.0 3.41e-01 100.0% 35.0%
4225207 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.57 43.0 4.16e-01 97.8% 73.3%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.42e-01 100.0% 90.0%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.56 44.0 4.27e-01 100.0% 78.0%
3933892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.13e-01 100.0% 95.0%
3611989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 3.28e-01 100.0% 55.3%
3875218 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.55 43.0 4.07e-01 100.0% 75.4%
3300848 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.55 41.0 3.40e-01 97.8% 40.8%
4998148 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.20e-01 100.0% 83.6%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.13e-01 100.0% 93.3%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.55 43.0 4.13e-01 100.0% 90.0%
4044896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 3.92e-01 100.0% 70.7%
3930311 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.54 42.0 3.37e-01 100.0% 75.8%
5079687 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.62e-01 97.8% 16.0%
3708055 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 42.0 3.96e-01 100.0% 76.9%
3782293 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.54 39.0 3.89e-01 100.0% 78.2%
3601162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 3.93e-01 100.0% 76.9%
3381251 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.70e-01 97.8% 56.2%
4116921 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.53 43.0 4.06e-01 97.8% 75.0%
4017127 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 41.0 2.67e-01 95.7% 23.6%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.51 40.0 3.93e-01 100.0% 89.1%
2772527 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 39.0 3.31e-01 89.1% 51.8%
3507883 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 38.0 3.14e-01 100.0% 81.7%
4418620 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 39.0 2.14e-01 95.7% 4.5%