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MT227924.1__QIW88966.1__phiV208_35__00035

Bact-Vir

MT227924.1__QIW88966.1__phiV208_35__00035

Identity

Accession:
MT227924 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-49
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 63.0 4.80e-01 97.1% 37.6%
1vb3A01 3.90.1380.10 Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain 0.79 62.0 4.81e-01 100.0% 39.5%
2iieA01 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.78 65.0 4.60e-01 100.0% 31.5%
6wxrA01 1.10.640.10 Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type 0.77 60.0 3.37e-01 100.0% 8.4%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.76 62.0 5.29e-01 100.0% 60.9%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.76 53.0 3.61e-01 100.0% 20.3%
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.75 63.0 4.98e-01 100.0% 50.6%
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.75 59.0 4.88e-01 97.1% 47.2%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 4.35e-01 88.6% 36.9%
6pd2A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.74 58.0 3.60e-01 100.0% 14.5%
16vpA00 1.10.1290.10 Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) 0.73 57.0 3.41e-01 100.0% 11.6%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.73 56.0 4.21e-01 97.1% 36.9%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 56.0 4.52e-01 100.0% 79.3%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.72 57.0 4.69e-01 100.0% 46.7%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.71 56.0 3.90e-01 97.1% 28.5%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.71 54.0 4.30e-01 100.0% 40.0%
3no7A00 6.10.180.30 Special › Helix non-globular › Arc Repressor Mutant › 0.71 51.0 4.34e-01 80.0% 51.7%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.71 56.0 5.08e-01 97.1% 67.9%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 52.0 5.07e-01 97.1% 75.0%
2rreA00 1.10.10.2010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 54.0 4.37e-01 88.6% 52.7%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.69 57.0 5.20e-01 97.1% 73.5%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.69 52.0 4.54e-01 88.6% 62.1%
2uytA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 54.0 3.32e-01 100.0% 24.6%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.68 56.0 4.51e-01 100.0% 46.7%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 51.0 3.78e-01 100.0% 30.0%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.67 50.0 4.23e-01 100.0% 45.6%
3swxA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.67 51.0 4.44e-01 88.6% 58.6%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.67 54.0 4.11e-01 100.0% 79.4%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.31e-01 82.9% 54.2%
1kl7A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 50.0 3.11e-01 100.0% 13.1%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 49.0 2.97e-01 100.0% 11.5%
5kjpA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.66 57.0 4.83e-01 100.0% 100.0%
3bh0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 51.0 3.11e-01 97.1% 65.1%
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.64 49.0 4.63e-01 100.0% 68.6%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.45e-01 97.1% 74.1%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.61e-01 97.1% 70.9%
2e6oA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.63 48.0 3.84e-01 97.1% 41.4%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 47.0 4.40e-01 100.0% 67.9%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 3.98e-01 85.7% 47.6%
4z7eA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 52.0 3.41e-01 100.0% 34.3%
3sszA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 50.0 3.53e-01 100.0% 27.1%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 50.0 3.27e-01 100.0% 96.6%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.61 52.0 3.47e-01 100.0% 25.7%
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 42.0 4.09e-01 82.9% 63.0%
3au4A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.58 46.0 2.98e-01 97.1% 35.2%
3c24A02 1.10.3640.10 Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal 0.57 42.0 3.26e-01 94.3% 96.0%
7px0A01 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 48.0 3.36e-01 100.0% 64.2%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 40.0 3.87e-01 97.1% 67.4%
1z8sA02 6.10.140.360 Special › Helix non-globular › Helix Hairpins › 0.54 42.0 4.10e-01 97.1% 100.0%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 38.0 2.39e-01 94.3% 83.3%
1xatA00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.52 41.0 2.60e-01 94.3% 17.8%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3808288 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.92 82.0 5.72e-01 97.1% 35.0%
3839206 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.92 73.0 5.52e-01 100.0% 38.7%
4464648 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.86 66.0 5.39e-01 85.7% 46.2%
3578893 4230.1.1.7 alpha arrays › DnaD domain › DnaD domain › DnaD domain › Y_phosphatase 0.83 71.0 5.39e-01 100.0% 41.2%
3705956 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.83 70.0 5.16e-01 100.0% 36.8%
3885028 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.82 68.0 5.16e-01 97.1% 40.0%
5045747 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.81 60.0 4.54e-01 88.6% 33.3%
3302016 103.1.1.2 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE 0.80 61.0 5.50e-01 85.7% 68.0%
4595954 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.80 63.0 4.94e-01 100.0% 41.2%
3248213 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.79 63.0 3.81e-01 100.0% 15.0%
3581450 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.79 61.0 5.34e-01 88.6% 63.6%
3648830 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 63.0 4.94e-01 100.0% 45.9%
5022532 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 63.0 5.09e-01 100.0% 52.0%
4360631 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.78 61.0 3.53e-01 100.0% 9.6%
3503648 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.77 57.0 4.98e-01 100.0% 51.7%
4339297 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 59.0 3.78e-01 100.0% 24.1%
3174813 2485.1.1.50 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_13 0.74 59.0 3.69e-01 100.0% 23.2%
4929712 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.74 60.0 3.71e-01 100.0% 80.9%
4003682 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 59.0 4.73e-01 100.0% 45.3%
3580179 103.11.1.1 alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N 0.73 58.0 4.83e-01 100.0% 50.0%
3809576 103.4.1.5 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.72 52.0 4.55e-01 100.0% 47.7%
3550406 541.1.1.0 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.72 59.0 5.39e-01 100.0% 82.0%
3497163 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.72 57.0 4.59e-01 100.0% 45.0%
3493395 541.1.1.1 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › RIIa 0.72 51.0 4.81e-01 100.0% 60.0%
3187686 7574.1.1.0 a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) 0.71 59.0 3.56e-01 100.0% 15.6%
3295850 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 53.0 5.00e-01 97.1% 66.0%
5048048 4957.1.1.9 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS 0.70 55.0 4.57e-01 100.0% 52.0%
3478493 541.1.1.0 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.70 49.0 4.62e-01 100.0% 60.0%
3740294 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.70 55.0 3.73e-01 100.0% 23.3%
5058742 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.69 52.0 2.91e-01 100.0% 9.5%
2554862 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.68 50.0 4.84e-01 91.4% 72.7%
3426642 375.1.1.96 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY 0.68 51.0 4.72e-01 100.0% 64.0%
3402349 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.68 54.0 4.75e-01 100.0% 60.0%
5030654 5073.1.1.11 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C 0.67 56.0 3.10e-01 100.0% 55.9%
4937761 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.67 52.0 2.88e-01 100.0% 7.9%
3999832 541.1.1.2 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dpy-30 0.67 48.0 4.52e-01 88.6% 72.0%
5052409 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.64 53.0 3.23e-01 100.0% 15.3%
3735395 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.63 51.0 2.98e-01 97.1% 9.7%
4941123 4333.1.1.2 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C 0.62 46.0 2.75e-01 85.7% 10.4%
3872568 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.62 52.0 3.43e-01 100.0% 21.2%
3839403 4333.1.1.2 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C 0.61 45.0 2.73e-01 85.7% 10.2%
3202736 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.61 43.0 4.20e-01 97.1% 66.0%
3196947 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 42.0 2.41e-01 100.0% 6.0%
3692017 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 50.0 3.42e-01 100.0% 25.0%
3893243 190.1.1.9 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_WDHD1 0.58 41.0 3.89e-01 94.3% 63.6%