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MT227925.1__QMP18275.1__phiV141_18__00017

Bact-Vir

MT227925.1__QMP18275.1__phiV141_18__00017

Identity

Accession:
MT227925 ↗
Kingdom:
phage

Quality

68.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Fujianvirus› Vibrio_phage_phiV141

TaxID: 2723905

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 100-264
PDB
Domain cluster: rep: NC_047778.1__YP_009787320.1__QLL94_gp20__00020__D40-226
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 36.0 4.78e-01 76.4% 100.0%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 36.0 4.02e-01 86.7% 80.6%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.51 16.0 2.48e-01 85.5% 63.6%
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.50 27.0 3.29e-01 86.1% 81.4%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.50 21.0 2.90e-01 70.9% 76.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964606 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 67.0 6.71e-01 100.0% 87.1%
4033192 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 49.0 5.50e-01 86.7% 84.6%
4032024 2.1.1.335 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29902 0.63 34.0 4.32e-01 75.8% 89.5%
3189631 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 36.0 4.01e-01 87.3% 71.5%
3276225 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 30.0 3.64e-01 70.3% 70.9%
3344144 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 30.0 4.09e-01 82.4% 96.4%
3940786 2.3.1.1 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP 0.58 37.0 4.14e-01 80.6% 81.5%
4402145 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 39.0 3.86e-01 72.1% 81.1%
3905133 2.1.1.243 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30831 0.52 39.0 4.38e-01 86.1% 99.2%
3702518 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 34.0 3.98e-01 76.4% 98.2%
3888827 2.1.1.256 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF31101 0.51 46.0 4.53e-01 98.8% 98.9%
4000801 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 30.0 3.44e-01 88.5% 76.0%
3172477 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 36.0 3.93e-01 73.3% 97.9%
3507768 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 27.0 3.29e-01 89.1% 82.0%
D2 medium residues 265-318
PDB
Domain cluster: rep: ON531987.1__UUG68445.1__X__00026__D70-134
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.57 40.0 3.47e-01 75.9% 54.3%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 29.0 2.87e-01 98.1% 43.9%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.53 39.0 2.74e-01 81.5% 94.7%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 39.0 2.88e-01 85.2% 66.7%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 38.0 2.56e-01 79.6% 18.5%
4l63A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.52 37.0 2.54e-01 92.6% 17.7%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 35.0 2.72e-01 72.2% 92.1%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 37.0 2.62e-01 81.5% 65.4%
1kqfA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 2.82e-01 100.0% 80.8%
6s21B01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.50 41.0 2.56e-01 100.0% 86.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3686916 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.61 43.0 2.90e-01 75.9% 24.7%
3699192 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.58 40.0 2.67e-01 75.9% 18.5%
3704631 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.57 40.0 2.48e-01 75.9% 12.0%
3459249 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 34.0 2.70e-01 100.0% 25.0%
3670599 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.57 41.0 3.17e-01 79.6% 38.5%
5083025 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.56 45.0 3.59e-01 96.3% 92.8%
4473615 513.1.1.1 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.56 36.0 3.11e-01 72.2% 38.3%
3526383 109.4.1.1907 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xin 0.55 40.0 2.32e-01 83.3% 7.9%
3998381 2004.1.1.432 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.55 35.0 2.31e-01 100.0% 13.9%
5040883 5069.1.1.1 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrome_B 0.54 45.0 2.99e-01 100.0% 38.7%
3961811 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 33.0 2.43e-01 100.0% 20.0%
3594415 4015.1.1.0 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins 0.51 35.0 2.51e-01 75.9% 71.9%
3695371 7516.1.1.26 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.51 38.0 2.16e-01 81.5% 37.6%
3316738 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.50 39.0 2.54e-01 100.0% 56.0%