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MT233524.1__QJA17853.1__vBSenI1_92__00092

Bact-Vir

MT233524.1__QJA17853.1__vBSenI1_92__00092

Identity

Accession:
MT233524 ↗
Kingdom:
phage

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Tequintavirus› Salmonella_phage_vB_Sen_I1

TaxID: 2723910

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-34
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.67 52.0 3.89e-01 100.0% 80.8%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 52.0 3.34e-01 100.0% 66.7%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 51.0 3.52e-01 100.0% 45.4%
4gniA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.64 48.0 4.23e-01 96.9% 57.9%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 46.0 2.75e-01 81.2% 10.4%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 44.0 4.29e-01 90.6% 66.7%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.61 45.0 3.08e-01 100.0% 21.8%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.61 48.0 2.98e-01 100.0% 31.4%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.60 44.0 3.99e-01 96.9% 53.6%
2pjdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 48.0 3.09e-01 100.0% 52.0%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 49.0 3.26e-01 100.0% 31.2%
1wxcB01 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.59 42.0 3.69e-01 90.6% 45.2%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 44.0 2.77e-01 90.6% 14.8%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.59 45.0 4.01e-01 100.0% 56.4%
2w20A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.58 43.0 3.52e-01 96.9% 76.2%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 41.0 3.47e-01 90.6% 47.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.49e-01 90.6% 46.2%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 40.0 2.95e-01 100.0% 27.7%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.57 42.0 3.25e-01 100.0% 31.1%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.36e-01 100.0% 81.1%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.55 39.0 3.08e-01 100.0% 34.0%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.54 40.0 3.34e-01 96.9% 74.7%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 36.0 2.66e-01 100.0% 71.7%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.51 39.0 2.65e-01 100.0% 20.6%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.51 36.0 2.84e-01 90.6% 56.2%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.50 34.0 2.10e-01 100.0% 24.0%
2psmC01 2.20.28.230 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 37.0 3.34e-01 90.6% 76.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3892496 260.1.1.0 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat 0.74 62.0 4.47e-01 100.0% 32.0%
3374952 375.4.1.5 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C 0.74 53.0 3.89e-01 78.1% 29.4%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 54.0 4.18e-01 100.0% 36.0%
3656431 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.73 51.0 2.83e-01 81.2% 5.4%
3941210 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.72 49.0 3.53e-01 71.9% 50.5%
3928506 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.72 58.0 4.36e-01 100.0% 36.5%
4865207 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 50.0 5.03e-01 81.2% 82.4%
3506715 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.70 53.0 3.44e-01 90.6% 18.1%
4961948 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.69 53.0 3.66e-01 90.6% 24.2%
4932987 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 47.0 4.72e-01 81.2% 68.6%
4235146 129.1.1.2 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.68 54.0 3.57e-01 100.0% 20.7%
3895434 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.68 51.0 3.60e-01 93.8% 52.5%
3969498 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 51.0 3.03e-01 93.8% 10.2%
4131219 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.66 52.0 4.45e-01 100.0% 68.3%
4989647 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.65 45.0 3.86e-01 81.2% 40.0%
5030311 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 52.0 4.43e-01 93.8% 54.5%
5038043 129.1.1.2 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.65 50.0 3.33e-01 100.0% 18.8%
3641506 3957.1.1.0 ↗ a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 0.64 45.0 3.44e-01 78.1% 29.4%
4927803 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 45.0 4.20e-01 93.8% 56.0%
3404925 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 52.0 4.64e-01 100.0% 66.0%
3707024 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 49.0 3.09e-01 100.0% 15.2%
5029683 4986.1.1.0 ↗ few secondary structure elements › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain 0.63 47.0 4.23e-01 84.4% 56.0%
4864637 7008.1.1.1 ↗ alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa 0.63 50.0 3.38e-01 100.0% 43.0%
4414431 2002.1.1.23 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.63 43.0 2.55e-01 81.2% 7.5%
4102279 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.62 44.0 2.62e-01 84.4% 14.6%
4028716 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 42.0 2.98e-01 81.2% 20.7%
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 45.0 3.45e-01 90.6% 33.3%
3356481 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.61 45.0 3.63e-01 100.0% 37.3%
7406 219.1.1.40 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AmiA-like 0.61 44.0 2.65e-01 100.0% 11.0%
3184613 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 44.0 2.87e-01 93.8% 17.1%
3536326 1073.1.1.0 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) 0.60 47.0 3.54e-01 96.9% 46.7%
4969039 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.59 41.0 2.67e-01 81.2% 14.6%
3225702 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 48.0 4.50e-01 96.9% 75.0%
4992408 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 4.12e-01 93.8% 64.4%
4061485 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.59 43.0 2.85e-01 93.8% 17.7%
3930365 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.58 44.0 3.27e-01 96.9% 64.8%
4979786 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.58 40.0 2.88e-01 81.2% 22.5%
4202291 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.57 43.0 3.55e-01 93.8% 58.6%
3706300 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.57 41.0 2.60e-01 87.5% 19.6%
3797569 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 44.0 3.89e-01 96.9% 65.5%
4933707 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.56 39.0 2.54e-01 81.2% 14.6%
4009232 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.56 40.0 2.57e-01 81.2% 14.1%
5030263 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.56 39.0 3.68e-01 81.2% 57.8%
184802 386.1.1.46 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_C2H2_13 0.55 40.0 3.85e-01 78.1% 59.1%
5014906 109.2.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.55 39.0 2.19e-01 90.6% 10.0%
3260369 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 40.0 3.79e-01 90.6% 64.4%
3273866 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 41.0 2.30e-01 93.8% 7.6%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 38.0 2.95e-01 90.6% 31.0%
None — 0.54 38.0 2.26e-01 81.2% 7.5%
5008657 2003.2.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.54 42.0 2.57e-01 100.0% 12.0%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.53 41.0 3.48e-01 90.6% 48.3%
3217280 355.1.1.0 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.53 40.0 3.52e-01 87.5% 58.2%
3401325 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 40.0 3.33e-01 90.6% 46.2%
3519410 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.51 37.0 3.58e-01 81.2% 69.2%