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MT234670.1__QIW88501.1__X__00068
Bact-VirMT234670.1__QIW88501.1__X__00068
Identity
- Accession:
- MT234670 ↗
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-52
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 38.2 | 1.90e-09 | 98.0% | 47.4% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.89 | 80.0 | 6.44e-01 | 100.0% | 57.6% |
| 1neiA00 | 3.30.160.220 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG | 0.63 | 47.0 | 4.49e-01 | 93.9% | 68.3% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.62 | 44.0 | 2.73e-01 | 79.6% | 29.2% |
| 1ex0B02 | 3.90.260.10 | Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like | 0.61 | 49.0 | 3.10e-01 | 100.0% | 47.5% |
| 3ihjA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 40.0 | 2.81e-01 | 71.4% | 58.8% |
| 1mfwA00 | 3.10.20.230 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain | 0.58 | 48.0 | 3.90e-01 | 100.0% | 72.6% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.58 | 40.0 | 2.98e-01 | 87.8% | 25.9% |
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.58 | 40.0 | 4.23e-01 | 100.0% | 100.0% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.57 | 47.0 | 3.35e-01 | 100.0% | 30.8% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.56 | 47.0 | 4.17e-01 | 100.0% | 63.6% |
| 1ciaA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.56 | 41.0 | 2.79e-01 | 87.8% | 19.7% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 46.0 | 3.42e-01 | 95.9% | 67.5% |
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.53 | 45.0 | 4.14e-01 | 100.0% | 97.0% |
| 2bm0A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.53 | 34.0 | 3.46e-01 | 79.6% | 60.8% |
| 1bccD02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.53 | 40.0 | 2.86e-01 | 91.8% | 77.6% |
| 5w0kA01 | 3.90.380.20 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II | 0.53 | 44.0 | 2.77e-01 | 100.0% | 77.8% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 40.0 | 3.65e-01 | 100.0% | 60.5% |
| 2pw9C02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 44.0 | 4.22e-01 | 100.0% | 94.8% |
| 2jl8102 | 3.30.160.850 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 37.0 | 3.85e-01 | 87.8% | 86.7% |
| 2pe4A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 42.0 | 2.47e-01 | 89.8% | 86.6% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.52 | 44.0 | 2.69e-01 | 93.9% | 56.0% |
| 3bk2A03 | 3.10.20.580 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 41.0 | 3.46e-01 | 100.0% | 69.7% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.51 | 43.0 | 2.51e-01 | 98.0% | 59.5% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.50 | 43.0 | 2.74e-01 | 100.0% | 66.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.50 | 37.0 | 3.22e-01 | 100.0% | 47.8% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 41.0 | 2.68e-01 | 100.0% | 23.3% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 77927 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.90 | 81.0 | 6.42e-01 | 100.0% | 56.4% |
| 5035240 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.80 | 34.0 | 2.87e-01 | 73.5% | 25.3% |
| 3496147 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.76 | 65.0 | 5.24e-01 | 100.0% | 63.0% |
| 7739 | 803.1.1.1 ↗ | a+b duplicates or obligate multimers › Hypothetical protein YoaG › Hypothetical protein YoaG › Hypothetical protein YoaG › DUF1869 | 0.63 | 47.0 | 4.49e-01 | 93.9% | 68.3% |
| 4944397 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 41.0 | 4.10e-01 | 87.8% | 68.0% |
| 3918540 | 386.1.1.281 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27082 | 0.62 | 44.0 | 4.78e-01 | 95.9% | 95.0% |
| 3594014 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.61 | 46.0 | 2.96e-01 | 81.6% | 55.0% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 50.0 | 4.72e-01 | 100.0% | 96.9% |
| 3970701 | 560.1.1.0 ↗ | few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain | 0.61 | 42.0 | 4.60e-01 | 100.0% | 90.0% |
| 3203770 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 48.0 | 4.66e-01 | 100.0% | 80.0% |
| 5073431 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.60 | 44.0 | 2.49e-01 | 77.6% | 32.2% |
| 3233262 | 706.1.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE | 0.60 | 39.0 | 4.26e-01 | 75.5% | 94.3% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.60 | 47.0 | 4.34e-01 | 100.0% | 90.7% |
| 3937186 | 221.4.1.21 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › PF30669 | 0.59 | 45.0 | 2.86e-01 | 85.7% | 60.0% |
| 3710894 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 46.0 | 4.48e-01 | 100.0% | 77.6% |
| 4927100 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.58 | 47.0 | 3.93e-01 | 91.8% | 90.0% |
| 1874307 | 375.1.1.65 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Thio2_N | 0.58 | 40.0 | 4.23e-01 | 100.0% | 100.0% |
| 5018200 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.58 | 43.0 | 2.46e-01 | 79.6% | 84.1% |
| 3974688 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.58 | 41.0 | 4.12e-01 | 81.6% | 82.0% |
| 3958996 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 43.0 | 2.81e-01 | 83.7% | 70.4% |
| 5058513 | 7012.1.1.1 ↗ | a+b complex topology › Monotopic phosphoglycosyl transferase (PGT)-like › Monotopic phosphoglycosyl transferase (PGT)-like › Monotopic phosphoglycosyl transferase (PGT)-like › Bac_transf | 0.57 | 41.0 | 2.78e-01 | 77.6% | 37.5% |
| 3596419 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.57 | 39.0 | 4.11e-01 | 89.8% | 95.0% |
| 3946510 | 803.1.1.0 ↗ | a+b duplicates or obligate multimers › Hypothetical protein YoaG › Hypothetical protein YoaG › Hypothetical protein YoaG | 0.57 | 43.0 | 4.46e-01 | 91.8% | 95.6% |
| 3596174 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.56 | 43.0 | 4.03e-01 | 100.0% | 65.7% |
| 3979711 | 252.2.1.6 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 | 0.56 | 40.0 | 3.81e-01 | 91.8% | 63.1% |
| 938685 | 11.16.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in A1 cistron-splicing factor AAR2 › N-terminal domain in A1 cistron-splicing factor AAR2 › AAR2_1st | 0.55 | 41.0 | 2.96e-01 | 83.7% | 69.3% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.54 | 37.0 | 2.54e-01 | 95.9% | 16.4% |
| 3882038 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.54 | 39.0 | 2.88e-01 | 79.6% | 38.7% |
| 4942828 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.54 | 39.0 | 2.76e-01 | 77.6% | 72.0% |
| 3360654 | 376.1.3.57 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_ULT1 | 0.54 | 42.0 | 4.12e-01 | 91.8% | 87.3% |
| 3586911 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.53 | 39.0 | 3.17e-01 | 79.6% | 62.1% |
| 3623139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.53 | 39.0 | 2.62e-01 | 93.9% | 17.2% |
| 3702742 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.52 | 45.0 | 2.92e-01 | 100.0% | 40.8% |
| 5050596 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 37.0 | 3.41e-01 | 98.0% | 57.1% |
| 3652410 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.51 | 37.0 | 3.07e-01 | 100.0% | 40.0% |
| 3575090 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.51 | 43.0 | 2.95e-01 | 100.0% | 39.7% |