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MT241607.1__QIW86584.1__AMA2_25__00025

Bact-Vir

MT241607.1__QIW86584.1__AMA2_25__00025

Identity

Accession:
MT241607 ↗
Kingdom:
phage

Quality

58.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-90
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 63.0 5.96e-01 100.0% 67.3%
4u7bA01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.84 71.0 6.89e-01 95.7% 86.3%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.79 67.0 6.64e-01 100.0% 94.0%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 59.0 5.79e-01 97.8% 74.5%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 57.0 5.80e-01 100.0% 82.2%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.78 64.0 5.66e-01 100.0% 62.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.77 67.0 5.27e-01 100.0% 69.1%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 67.0 5.48e-01 100.0% 56.3%
1xriA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.76 64.0 4.49e-01 100.0% 29.8%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.73 56.0 3.64e-01 97.8% 18.1%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.73 58.0 4.57e-01 95.7% 60.4%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.72 61.0 5.06e-01 100.0% 62.5%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 5.34e-01 100.0% 62.7%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.71 59.0 4.62e-01 93.5% 55.6%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 58.0 4.88e-01 93.5% 53.8%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 5.36e-01 95.7% 69.8%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 4.65e-01 100.0% 57.8%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 4.20e-01 100.0% 35.7%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 52.0 3.61e-01 93.5% 29.5%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.65 55.0 4.35e-01 100.0% 78.8%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.63 49.0 4.53e-01 100.0% 81.4%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.78e-01 95.7% 92.9%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 52.0 3.95e-01 100.0% 83.5%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.49e-01 100.0% 60.0%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.62 49.0 4.63e-01 91.3% 73.2%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.99e-01 100.0% 85.7%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 46.0 4.12e-01 82.6% 66.7%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 50.0 4.92e-01 91.3% 92.0%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.60 48.0 3.39e-01 93.5% 34.4%
1sr9B03 1.10.1220.20 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › 0.60 39.0 3.91e-01 73.9% 63.0%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.53e-01 84.8% 51.0%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.07e-01 100.0% 82.1%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 47.0 4.22e-01 100.0% 77.0%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.06e-01 100.0% 58.6%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 47.0 3.61e-01 100.0% 83.7%
3a11B01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.56 43.0 3.41e-01 100.0% 65.6%
2be4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 45.0 3.87e-01 95.7% 77.8%
1rr7A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 36.0 3.67e-01 73.9% 78.3%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.54 42.0 4.16e-01 95.7% 90.2%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 45.0 3.49e-01 100.0% 40.0%
2d7lA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 36.0 3.52e-01 78.3% 66.0%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3730705 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 82.0 7.95e-01 97.8% 90.0%
3781047 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.91 81.0 7.43e-01 100.0% 76.7%
3184342 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 79.0 7.23e-01 100.0% 76.7%
3313889 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 78.0 7.62e-01 100.0% 92.0%
3931083 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.88 78.0 7.66e-01 100.0% 92.0%
4501343 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.87 73.0 6.91e-01 93.5% 83.6%
3937317 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.87 75.0 7.28e-01 95.7% 88.0%
3962579 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 74.0 5.20e-01 100.0% 32.1%
5045983 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.84 75.0 5.77e-01 100.0% 48.0%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.84 73.0 6.57e-01 100.0% 70.8%
3960420 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 72.0 5.27e-01 100.0% 36.8%
3522325 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.83 73.0 6.52e-01 100.0% 72.3%
4983508 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 73.0 6.39e-01 100.0% 67.1%
4117405 101.1.1.228 alpha arrays › HTH › HTH › Three-helical HTH › Eaf7 0.83 71.0 6.56e-01 97.8% 90.0%
3958338 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.83 67.0 6.78e-01 93.5% 93.3%
3961039 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.82 68.0 6.87e-01 97.8% 97.8%
3929086 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.82 70.0 6.66e-01 100.0% 85.5%
3928087 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.81 69.0 6.12e-01 100.0% 67.1%
5079851 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 70.0 6.51e-01 100.0% 76.7%
3962597 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.81 68.0 6.15e-01 100.0% 69.2%
3958041 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 68.0 6.15e-01 100.0% 69.2%
3957316 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.81 67.0 6.10e-01 100.0% 69.2%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 68.0 6.15e-01 97.8% 70.8%
3358320 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.80 66.0 6.37e-01 97.8% 87.3%
3257722 198.1.1.3 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.80 68.0 5.65e-01 100.0% 63.5%
3434511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 67.0 6.09e-01 97.8% 75.4%
4022380 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 70.0 5.37e-01 100.0% 45.7%
5044345 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 69.0 5.78e-01 100.0% 60.0%
3255955 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.79 67.0 5.56e-01 100.0% 63.5%
3927240 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 69.0 6.53e-01 100.0% 90.9%
5064030 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.79 68.0 5.42e-01 100.0% 53.7%
3338988 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.79 63.0 5.90e-01 93.5% 76.7%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 67.0 6.34e-01 97.8% 80.0%
3929147 101.1.1.103 alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.79 67.0 6.40e-01 100.0% 83.6%
3966077 101.26.1.1 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.78 67.0 5.87e-01 100.0% 64.3%
3590178 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.78 67.0 4.09e-01 100.0% 15.9%
3234099 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.78 67.0 6.07e-01 100.0% 73.8%
3217577 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.78 66.0 6.17e-01 100.0% 76.7%
3617137 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 67.0 6.41e-01 100.0% 94.5%
4995581 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 67.0 5.23e-01 100.0% 51.0%
3365315 101.1.1.291 alpha arrays › HTH › HTH › Three-helical HTH › PF26175 0.77 64.0 6.15e-01 97.8% 87.3%
3781058 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 65.0 6.16e-01 95.7% 90.9%
3948842 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 6.11e-01 95.7% 80.0%
5017220 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 5.83e-01 100.0% 84.6%
3212366 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.76 64.0 6.28e-01 100.0% 90.0%
3741636 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 5.15e-01 100.0% 53.8%
3214724 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.75 63.0 5.74e-01 100.0% 75.4%
3234027 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.75 63.0 5.86e-01 100.0% 78.3%
3233004 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 6.06e-01 95.7% 88.0%
3597985 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 5.32e-01 100.0% 61.3%
4489939 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.74 63.0 5.84e-01 97.8% 86.7%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 62.0 5.95e-01 100.0% 83.6%
4167899 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.74 63.0 6.00e-01 100.0% 89.1%
3616699 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.54e-01 97.8% 78.6%
4378615 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.74 59.0 5.61e-01 89.1% 85.5%
4929815 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 5.56e-01 100.0% 70.8%
3220510 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.73 60.0 5.98e-01 100.0% 94.0%
4678981 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 58.0 5.74e-01 91.3% 90.0%
3506989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 6.18e-01 100.0% 92.0%
4142344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 5.88e-01 97.8% 92.7%
4200176 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.72 61.0 3.61e-01 100.0% 12.7%
5058272 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.72 58.0 5.86e-01 95.7% 95.6%
3174958 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 59.0 5.63e-01 95.7% 92.7%
5070907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 59.0 5.96e-01 97.8% 100.0%
4952912 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 57.0 5.82e-01 97.8% 97.8%
3593172 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 4.96e-01 100.0% 56.5%
4995777 101.42.1.0 alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins 0.70 57.0 5.43e-01 91.3% 89.1%
3886268 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.69 57.0 4.44e-01 97.8% 44.5%
5041402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 5.00e-01 97.8% 84.6%
2084570 592.7.1.1 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.68 56.0 4.62e-01 100.0% 48.9%
3566066 198.1.1.8 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA+SapB_2+SapB_1 0.68 56.0 3.62e-01 100.0% 24.4%
3488926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 54.0 5.20e-01 95.7% 92.7%
5074415 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.61 51.0 3.49e-01 100.0% 27.6%
5043888 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 44.0 4.21e-01 91.3% 75.4%
4999606 2006.1.4.50 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.55 41.0 3.18e-01 89.1% 35.2%
1103158 6119.1.1.2 alpha bundles › Helical bundle domain in CusB › Helical bundle domain in CusB › Helical bundle domain in CusB › PF25869 0.54 39.0 3.89e-01 91.3% 81.1%