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MT254578.1__QIW89732.1__Izhevsk_50__00050

Bact-Vir

MT254578.1__QIW89732.1__Izhevsk_50__00050

Identity

Accession:
MT254578 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tsamsavirus› Bacillus_phage_Izhevsk

TaxID: 2724322

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-54
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.70 58.0 5.44e-01 100.0% 74.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.70 60.0 4.22e-01 100.0% 89.2%
2ip4A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.70 54.0 5.06e-01 98.0% 68.2%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 58.0 4.78e-01 100.0% 85.9%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 60.0 5.13e-01 100.0% 72.0%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.68 58.0 4.33e-01 98.0% 37.6%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 57.0 4.67e-01 100.0% 51.1%
3p1vA01 2.60.40.3250 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain 0.68 60.0 4.36e-01 100.0% 44.9%
1w5dA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.66 48.0 3.06e-01 78.0% 91.4%
1zbuB01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.62 44.0 3.85e-01 86.0% 50.0%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 50.0 4.29e-01 98.0% 66.3%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.62 45.0 3.44e-01 80.0% 78.9%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 54.0 4.10e-01 100.0% 42.0%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 51.0 4.46e-01 100.0% 97.6%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 50.0 4.15e-01 100.0% 49.5%
4zdnA02 1.10.1240.100 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.61 41.0 3.33e-01 70.0% 38.3%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 55.0 4.21e-01 100.0% 53.6%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.10e-01 94.0% 52.0%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.61 50.0 4.45e-01 98.0% 97.5%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 54.0 4.15e-01 100.0% 51.8%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.61 46.0 4.63e-01 94.0% 86.0%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.60 50.0 4.35e-01 100.0% 91.7%
4y0eB00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.59 41.0 2.59e-01 74.0% 48.1%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 4.07e-01 94.0% 57.0%
1xp4A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 50.0 3.23e-01 100.0% 79.6%
4jg5A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 51.0 3.51e-01 100.0% 41.1%
1bu6O01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 49.0 3.24e-01 100.0% 35.1%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.58 47.0 4.22e-01 96.0% 98.7%
1p6oA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 48.0 3.51e-01 100.0% 69.2%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 51.0 3.50e-01 100.0% 76.4%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 46.0 2.99e-01 100.0% 69.0%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 44.0 2.91e-01 96.0% 74.0%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 49.0 3.60e-01 98.0% 77.3%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 49.0 3.65e-01 98.0% 63.6%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 47.0 3.42e-01 96.0% 65.2%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.54 43.0 4.36e-01 98.0% 95.9%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 46.0 3.46e-01 96.0% 63.6%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 46.0 3.51e-01 96.0% 65.4%
5hsxB00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.52 39.0 2.53e-01 88.0% 84.6%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 45.0 3.49e-01 98.0% 68.8%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070107 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.73 63.0 5.60e-01 96.0% 100.0%
3621262 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.71 58.0 5.41e-01 100.0% 73.3%
3738773 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.70 54.0 5.28e-01 100.0% 78.2%
3184485 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.69 58.0 4.66e-01 100.0% 46.3%
4059719 304.9.1.61 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Thc1_RRM 0.67 56.0 5.00e-01 98.0% 90.7%
4928070 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 54.0 4.34e-01 98.0% 45.2%
3586980 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 58.0 4.25e-01 100.0% 53.9%
3530806 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.65 53.0 3.87e-01 100.0% 61.3%
3733539 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.64 53.0 3.80e-01 100.0% 74.1%
5046999 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 48.0 3.58e-01 82.0% 94.8%
3270265 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.63 46.0 3.47e-01 80.0% 70.4%
3976575 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.63 53.0 3.92e-01 96.0% 35.6%
3270915 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.63 45.0 3.31e-01 78.0% 82.8%
5046621 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 46.0 3.54e-01 82.0% 83.2%
4977897 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 46.0 3.43e-01 82.0% 77.0%
3501051 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 47.0 3.78e-01 98.0% 39.1%
3945068 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 51.0 3.67e-01 96.0% 32.0%
3976564 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 50.0 3.63e-01 96.0% 32.0%
3248413 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.61 43.0 3.32e-01 80.0% 86.7%
4028321 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 45.0 3.13e-01 82.0% 56.2%
3800762 2011.1.1.3 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M17 0.61 49.0 3.23e-01 100.0% 21.6%
4180988 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.60 48.0 3.21e-01 100.0% 20.5%
3601494 210.2.1.0 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.59 52.0 3.21e-01 100.0% 45.8%
3445562 10.32.1.212 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.58 50.0 3.43e-01 100.0% 33.0%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.58 47.0 4.72e-01 100.0% 94.0%
3713011 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.57 47.0 2.98e-01 98.0% 56.7%
4020851 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 51.0 3.67e-01 96.0% 66.9%
3505777 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 48.0 3.29e-01 98.0% 74.2%
3176963 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 52.0 3.76e-01 100.0% 96.9%
3256878 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 49.0 3.47e-01 94.0% 49.0%
4929510 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 45.0 4.54e-01 88.0% 98.0%
4558763 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.57 50.0 3.60e-01 96.0% 54.1%
2557239 223.2.1.17 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SLM4 0.56 50.0 3.53e-01 98.0% 60.3%
5046495 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 51.0 3.96e-01 98.0% 57.0%
3400015 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.56 49.0 3.58e-01 96.0% 59.2%
5044631 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 49.0 3.52e-01 94.0% 57.7%
3705774 223.2.1.42 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin 0.56 47.0 3.12e-01 98.0% 70.7%
5049518 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 49.0 3.56e-01 96.0% 55.8%
5051015 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 49.0 3.39e-01 96.0% 49.7%
5071765 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 50.0 3.65e-01 98.0% 59.2%
3983387 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.55 49.0 3.44e-01 100.0% 40.0%
5051142 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 48.0 3.40e-01 96.0% 54.5%
3966115 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 47.0 3.28e-01 96.0% 48.1%
4945022 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 50.0 3.91e-01 100.0% 79.0%
4944953 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 48.0 3.76e-01 98.0% 77.1%
5051941 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 48.0 3.44e-01 98.0% 54.3%
3698579 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 48.0 3.63e-01 96.0% 74.5%
5047502 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 49.0 3.46e-01 98.0% 50.0%
3792565 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 40.0 3.24e-01 80.0% 80.0%
3996654 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 47.0 3.62e-01 96.0% 82.7%
3168516 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 47.0 3.31e-01 96.0% 63.3%
5041753 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 47.0 3.55e-01 96.0% 68.7%
3722450 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 47.0 3.33e-01 96.0% 60.7%
4018561 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 47.0 3.32e-01 96.0% 71.0%
3592234 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 48.0 3.66e-01 98.0% 75.5%
3977017 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.54 48.0 3.09e-01 100.0% 27.6%
3407363 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.53 47.0 3.31e-01 96.0% 56.6%
3794632 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.53 47.0 3.31e-01 96.0% 58.1%
3727505 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 47.0 3.65e-01 96.0% 82.0%
3183393 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 47.0 3.76e-01 98.0% 85.3%
4977323 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 3.31e-01 96.0% 63.2%
3598676 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 45.0 2.98e-01 98.0% 57.4%
4021454 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 3.20e-01 98.0% 48.9%