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MT270409.1__QJA43051.1__X__00109

Bact-Vir

MT270409.1__QJA43051.1__X__00109

Identity

Accession:
MT270409 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phaeobacter_phage_MD18

TaxID: 2723761

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69
PDB
Domain cluster: rep: KU708004.1__AMW64531.1__AH14a_p71__00071__D8-63
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.64 43.0 4.46e-01 71.0% 75.4%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 45.0 4.97e-01 77.4% 100.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.50e-01 71.0% 80.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 3.95e-01 79.0% 89.6%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.27e-01 71.0% 78.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.25e-01 72.6% 73.3%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 3.61e-01 72.6% 63.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.07e-01 71.0% 90.8%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.28e-01 71.0% 90.6%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.01e-01 71.0% 97.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.02e-01 72.6% 89.9%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 38.0 4.15e-01 72.6% 83.3%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.58 39.0 3.48e-01 71.0% 57.9%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 40.0 3.98e-01 72.6% 87.5%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.20e-01 71.0% 95.9%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 39.0 4.27e-01 71.0% 95.7%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.94e-01 72.6% 93.8%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.45e-01 75.8% 56.7%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.76e-01 75.8% 71.2%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.57 39.0 3.55e-01 74.2% 70.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 4.00e-01 72.6% 88.3%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 3.59e-01 71.0% 67.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 3.64e-01 72.6% 64.6%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 43.0 3.27e-01 83.9% 84.7%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 42.0 3.16e-01 83.9% 84.5%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 3.66e-01 72.6% 76.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 3.70e-01 72.6% 79.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.90e-01 75.8% 97.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.85e-01 71.0% 77.4%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.77e-01 75.8% 86.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.87e-01 72.6% 98.4%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.60e-01 75.8% 68.7%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 37.0 2.98e-01 75.8% 32.8%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 3.81e-01 72.6% 90.5%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 39.0 3.15e-01 75.8% 54.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.11e-01 74.2% 55.6%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.54 37.0 3.12e-01 71.0% 59.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.72e-01 72.6% 83.9%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 39.0 3.38e-01 79.0% 64.6%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 3.70e-01 72.6% 89.7%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.60e-01 72.6% 75.0%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.13e-01 80.6% 88.7%
6vg1A03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 34.0 3.01e-01 71.0% 78.2%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.71e-01 100.0% 86.8%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 36.0 3.44e-01 75.8% 80.6%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 4.43e-01 75.8% 67.1%
3218475 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.68 50.0 4.00e-01 77.4% 73.3%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 50.0 4.01e-01 82.3% 52.8%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.65 47.0 3.52e-01 79.0% 86.7%
3214474 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.64 47.0 4.05e-01 79.0% 67.0%
3208203 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.64 46.0 4.80e-01 77.4% 85.5%
3189994 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.63 51.0 4.55e-01 90.3% 64.4%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.72e-01 72.6% 94.0%
5049592 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.63 46.0 3.06e-01 82.3% 63.4%
3505640 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.63 47.0 4.79e-01 82.3% 83.3%
3500033 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 45.0 4.90e-01 79.0% 96.0%
3331569 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.62 43.0 4.49e-01 72.6% 96.4%
3603442 101.8.1.1 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.62 46.0 2.74e-01 82.3% 30.7%
3231263 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.62 42.0 4.50e-01 71.0% 88.0%
3205488 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 39.0 2.59e-01 71.0% 17.0%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 42.0 3.96e-01 71.0% 60.0%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.61 40.0 4.06e-01 72.6% 68.3%
3243256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 3.66e-01 91.9% 61.7%
5029363 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.61 42.0 4.35e-01 72.6% 81.7%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.22e-01 71.0% 75.0%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.61 41.0 4.13e-01 71.0% 72.3%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 41.0 4.07e-01 71.0% 98.5%
3547089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 43.0 3.88e-01 77.4% 65.6%
4933213 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.60 42.0 4.06e-01 74.2% 74.3%
3924213 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 43.0 3.82e-01 77.4% 63.2%
5079099 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.60 44.0 2.62e-01 82.3% 23.2%
3551576 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.60 40.0 3.86e-01 71.0% 64.0%
3620138 3246.1.1.4 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.60 41.0 3.50e-01 71.0% 56.0%
3407820 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 42.0 3.85e-01 75.8% 68.2%
3508441 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 42.0 3.72e-01 75.8% 67.4%
3627914 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 42.0 3.65e-01 75.8% 64.0%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 40.0 3.67e-01 71.0% 55.3%
3535268 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 42.0 3.70e-01 75.8% 61.1%
5032137 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.59 41.0 4.00e-01 74.2% 72.9%
3879068 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 41.0 3.76e-01 74.2% 69.4%
4627523 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.59 41.0 3.91e-01 74.2% 72.0%
3496659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 40.0 4.09e-01 71.0% 75.0%
4948153 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 3.96e-01 74.2% 72.9%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.58 40.0 3.86e-01 71.0% 67.1%
3938389 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 41.0 3.79e-01 75.8% 71.8%
4863266 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.58 40.0 3.96e-01 72.6% 92.3%
3596676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 3.68e-01 75.8% 66.7%
4026416 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.58 41.0 3.90e-01 75.8% 72.0%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.57 39.0 3.98e-01 71.0% 80.0%
4956733 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.57 39.0 3.85e-01 72.6% 74.3%
3407853 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 40.0 3.61e-01 75.8% 63.3%
3729161 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.57 40.0 3.63e-01 75.8% 58.9%
3561094 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 39.0 3.70e-01 72.6% 76.0%
3881111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 41.0 3.68e-01 79.0% 66.7%
4978599 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 40.0 2.56e-01 79.0% 34.8%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.56 41.0 3.50e-01 79.0% 58.1%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 38.0 3.65e-01 72.6% 76.0%
5072682 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.56 40.0 2.45e-01 82.3% 38.3%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.55 40.0 3.97e-01 88.7% 73.8%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 37.0 3.74e-01 72.6% 87.7%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 37.0 3.39e-01 71.0% 61.2%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 36.0 3.30e-01 71.0% 63.3%
3891252 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 36.0 3.68e-01 71.0% 85.0%
3603358 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.79e-01 72.6% 98.3%
3526953 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 37.0 3.71e-01 72.6% 84.1%
3488995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 36.0 3.63e-01 71.0% 86.2%
4882650 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.53 38.0 2.57e-01 77.4% 44.7%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 36.0 3.49e-01 72.6% 86.7%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 36.0 3.76e-01 72.6% 89.7%
3914462 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 40.0 3.66e-01 91.9% 88.9%
4550958 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 34.0 2.93e-01 71.0% 43.4%