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MT270409.1__QJA43053.1__X__00111

Bact-Vir

MT270409.1__QJA43053.1__X__00111

Identity

Accession:
MT270409 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phaeobacter_phage_MD18

TaxID: 2723761

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-55
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.66e-01 96.2% 73.1%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 46.0 3.48e-01 73.1% 35.0%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 49.0 3.21e-01 84.6% 92.4%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 50.0 4.17e-01 100.0% 50.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.03e-01 94.2% 62.5%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 48.0 3.37e-01 84.6% 72.0%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.62 45.0 3.97e-01 84.6% 51.2%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 47.0 3.36e-01 82.7% 72.6%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.16e-01 96.2% 20.9%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 46.0 4.25e-01 88.5% 94.5%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.11e-01 94.2% 69.8%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.60 46.0 3.66e-01 86.5% 74.5%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.59 51.0 3.93e-01 100.0% 65.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 38.0 3.70e-01 88.5% 59.3%
1jbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.73e-01 84.6% 93.3%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 49.0 4.56e-01 94.2% 87.5%
2bh8B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.90e-01 90.4% 69.1%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 38.0 4.03e-01 88.5% 78.3%
3dlsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 44.0 3.75e-01 94.2% 84.7%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 2.69e-01 75.0% 40.2%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 4.54e-01 96.2% 89.1%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.55 43.0 3.51e-01 92.3% 66.4%
6yllA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.50e-01 80.8% 100.0%
2j6aA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 45.0 3.34e-01 94.2% 89.0%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 4.19e-01 98.1% 81.4%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 46.0 4.34e-01 98.1% 90.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.85e-01 86.5% 83.0%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.53 39.0 3.60e-01 82.7% 90.1%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 4.11e-01 96.2% 89.2%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 4.32e-01 86.5% 100.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.52 35.0 3.55e-01 90.4% 68.6%
1xocA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 41.0 2.93e-01 86.5% 75.5%
5hesA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.82e-01 100.0% 96.3%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 42.0 4.09e-01 96.2% 91.5%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 42.0 3.52e-01 100.0% 61.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3616382 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 55.0 5.24e-01 90.4% 71.7%
3702559 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.68 56.0 3.13e-01 96.2% 27.8%
4065996 3894.1.1.2 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD 0.67 54.0 4.12e-01 98.1% 36.9%
3279701 319.1.1.16 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26059 0.65 46.0 4.06e-01 76.9% 100.0%
3828348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 42.0 3.98e-01 92.3% 53.8%
4930179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 41.0 4.07e-01 88.5% 61.8%
3217762 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 44.0 4.39e-01 100.0% 72.2%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.63 40.0 3.88e-01 92.3% 56.7%
4986625 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.62 46.0 3.39e-01 82.7% 55.3%
3593872 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 47.0 3.56e-01 86.5% 47.9%
3167513 381.1.1.3 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC 0.61 52.0 4.19e-01 96.2% 61.0%
3223920 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 46.0 4.14e-01 98.1% 58.7%
4882650 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.61 41.0 2.62e-01 71.2% 14.3%
3939893 5.1.3.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.61 49.0 3.24e-01 98.1% 65.0%
4210108 206.1.1.18 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › AceK_kinase 0.60 49.0 3.15e-01 92.3% 42.7%
4028595 59.1.4.1 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.60 49.0 3.66e-01 100.0% 47.7%
3635329 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 49.0 3.39e-01 98.1% 49.0%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.60 41.0 3.67e-01 94.2% 50.7%
4171510 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 39.0 3.42e-01 94.2% 43.8%
5042295 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.59 46.0 3.92e-01 88.5% 78.9%
3233511 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 39.0 3.84e-01 92.3% 63.6%
3789879 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 51.0 4.09e-01 98.1% 69.5%
3496659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 38.0 3.69e-01 88.5% 56.7%
4240494 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.58 50.0 3.02e-01 98.1% 28.8%
4032291 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.58 48.0 4.51e-01 92.3% 84.6%
4051852 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 49.0 4.60e-01 96.2% 87.7%
3317544 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 50.0 4.61e-01 96.2% 87.7%
4059146 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 48.0 4.48e-01 94.2% 86.2%
3789233 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 37.0 3.50e-01 90.4% 53.8%
4043601 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 48.0 4.53e-01 96.2% 89.2%
3948516 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 48.0 4.53e-01 96.2% 92.3%
3383283 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.56 48.0 4.48e-01 96.2% 89.2%
4483173 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.56 46.0 4.31e-01 92.3% 84.6%
5072502 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 46.0 4.53e-01 96.2% 91.4%
4168836 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.55 47.0 4.26e-01 96.2% 85.7%
4250239 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.54 46.0 4.33e-01 96.2% 86.2%
3481726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.55e-01 94.2% 61.7%
3403344 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.54 40.0 3.93e-01 94.2% 73.3%
4975151 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 46.0 4.53e-01 96.2% 98.2%
4039724 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.53 44.0 4.15e-01 94.2% 84.6%
4161636 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.53 43.0 4.05e-01 92.3% 86.2%
3846212 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 34.0 3.10e-01 94.2% 43.8%
3597793 5094.1.1.0 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like 0.53 42.0 3.11e-01 86.5% 36.3%
4218525 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 44.0 4.14e-01 96.2% 92.3%
4514267 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 36.0 3.77e-01 86.5% 100.0%