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MT270409.1__QJA43126.1__X__00184

Bact-Vir

MT270409.1__QJA43126.1__X__00184

Identity

Accession:
MT270409 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phaeobacter_phage_MD18

TaxID: 2723761

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-171
PDB
Domain cluster: rep: IMGVR_UViG_3300025133_003884-3300025133-Ga0208299_10032694__D59-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09225.18 best Endonuc-PvuII 146.9 6.00e-43 90.9% 71.4%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eyuA00 3.40.210.10 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › PVUII Endonuclease, subunit A 0.92 81.0 7.28e-01 90.9% 70.5%
4esjA01 3.40.210.30 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain 0.69 60.0 5.49e-01 96.7% 72.4%
3ndhA00 3.40.600.30 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › 0.67 58.0 4.81e-01 93.4% 64.5%
1rznA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 56.0 5.23e-01 96.7% 87.3%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.59 44.0 3.75e-01 79.3% 54.4%
1azoA00 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.58 51.0 4.24e-01 96.7% 93.9%
1r3fA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.55 30.0 3.79e-01 84.3% 95.4%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 39.0 3.66e-01 90.1% 64.1%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 30.0 3.05e-01 91.7% 55.4%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 30.0 3.23e-01 96.7% 64.5%
2qwvA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.51 40.0 3.47e-01 84.3% 62.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
388456 2008.1.1.41 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-PvuII 0.94 81.0 7.24e-01 90.9% 67.3%
5005296 2008.1.1.232 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF25941 0.75 61.0 6.17e-01 85.1% 85.0%
3592513 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 49.0 3.48e-01 75.2% 80.6%
3502069 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 48.0 4.34e-01 74.4% 64.4%
5037496 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 56.0 5.28e-01 90.9% 89.0%
5080723 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 55.0 5.10e-01 90.1% 80.0%
3725765 2008.1.1.147 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 0.66 47.0 3.94e-01 74.4% 57.1%
4946143 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 55.0 5.27e-01 90.9% 86.7%
3948544 2008.1.1.77 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.63 47.0 4.64e-01 77.7% 80.8%
4239877 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.63 45.0 3.31e-01 74.4% 41.9%
5040219 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 55.0 4.13e-01 97.5% 64.4%
5043638 3261.1.1.0 ↗ a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.62 40.0 4.49e-01 86.8% 84.2%
3822590 2008.1.1.77 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.60 46.0 4.77e-01 84.3% 84.3%
222168 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.59 44.0 3.75e-01 79.3% 54.4%
4365754 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.59 42.0 3.56e-01 74.4% 53.9%
4972132 2488.1.1.8 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.53 41.0 3.49e-01 84.3% 60.0%
133840 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.51 39.0 3.73e-01 90.1% 67.6%
5073945 2488.1.1.8 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.51 40.0 3.38e-01 83.5% 59.5%
3935987 210.1.2.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH,NAAA-beta 0.51 41.0 2.94e-01 87.6% 91.4%