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MT310852.1__QJD49729.1__SEA_CLUBPENGUIN_5__00005
Bact-VirMT310852.1__QJD49729.1__SEA_CLUBPENGUIN_5__00005
Identity
- Accession:
- MT310852 ↗
- Kingdom:
- phage
Quality
66.5
mean pLDDT
Taxonomy
TaxID: 2725618
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-178
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13563.13 best | 2_5_RNA_ligase2 | 31.7 | 2.00e-07 | 89.5% | 63.8% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jh6A00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.78 | 74.0 | 6.93e-01 | 100.0% | 93.9% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.76 | 72.0 | 6.70e-01 | 100.0% | 96.8% |
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.76 | 71.0 | 6.67e-01 | 100.0% | 96.2% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.74 | 69.0 | 6.22e-01 | 100.0% | 95.6% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.74 | 70.0 | 6.77e-01 | 100.0% | 98.2% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.72 | 67.0 | 6.29e-01 | 100.0% | 97.3% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.72 | 67.0 | 6.47e-01 | 100.0% | 96.5% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 24.0 | 3.78e-01 | 87.6% | 91.1% |
| 2rioA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 21.0 | 2.82e-01 | 85.6% | 61.0% |
| 1wgoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 21.0 | 2.64e-01 | 100.0% | 52.5% |
| 1cqmA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.53 | 32.0 | 3.99e-01 | 72.5% | 95.9% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 26.0 | 3.54e-01 | 92.2% | 100.0% |
| 3dkqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.50 | 39.0 | 3.68e-01 | 81.0% | 91.8% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951796 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 77.0 | 6.91e-01 | 100.0% | 98.0% |
| 3339513 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 74.0 | 7.01e-01 | 100.0% | 98.9% |
| 5019632 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.78 | 74.0 | 6.44e-01 | 100.0% | 94.5% |
| 3955687 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 71.0 | 6.95e-01 | 97.4% | 98.8% |
| 3698720 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.77 | 72.0 | 6.27e-01 | 100.0% | 87.0% |
| 3479830 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.77 | 73.0 | 6.62e-01 | 100.0% | 94.4% |
| 5011802 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 71.0 | 6.40e-01 | 100.0% | 84.4% |
| 3290691 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 71.0 | 6.30e-01 | 100.0% | 84.1% |
| 4026533 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.76 | 71.0 | 6.45e-01 | 100.0% | 96.0% |
| 277 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 71.0 | 6.67e-01 | 100.0% | 96.2% |
| 2322578 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.76 | 71.0 | 6.65e-01 | 100.0% | 96.2% |
| 4423124 | 264.1.1.15 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › DUF1045 | 0.76 | 70.0 | 6.07e-01 | 100.0% | 98.7% |
| 3397353 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.75 | 71.0 | 6.65e-01 | 100.0% | 96.7% |
| 3233020 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.75 | 70.0 | 6.49e-01 | 100.0% | 97.4% |
| 3690734 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 70.0 | 6.86e-01 | 100.0% | 98.2% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.75 | 70.0 | 6.62e-01 | 100.0% | 98.3% |
| 3894760 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.75 | 70.0 | 6.39e-01 | 100.0% | 95.9% |
| 1117634 | 264.1.1.8 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg | 0.74 | 69.0 | 5.96e-01 | 100.0% | 85.2% |
| None | — | 0.74 | 70.0 | 6.74e-01 | 100.0% | 97.0% | |
| 3739681 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.74 | 70.0 | 6.30e-01 | 100.0% | 97.5% |
| 3253597 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.74 | 69.0 | 6.31e-01 | 100.0% | 97.9% |
| 1869530 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.73 | 69.0 | 6.10e-01 | 100.0% | 92.9% |
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.73 | 68.0 | 6.36e-01 | 100.0% | 96.8% |
| 4956981 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.73 | 69.0 | 6.41e-01 | 100.0% | 96.8% |
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.73 | 69.0 | 6.50e-01 | 100.0% | 97.2% |
| 4951894 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.73 | 68.0 | 6.26e-01 | 100.0% | 87.2% |
| 3553577 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.73 | 68.0 | 6.51e-01 | 100.0% | 96.6% |
| None | — | 0.73 | 69.0 | 6.47e-01 | 100.0% | 97.8% | |
| 4968059 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.73 | 68.0 | 6.41e-01 | 100.0% | 97.8% |
| 1953031 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.73 | 68.0 | 6.49e-01 | 100.0% | 95.4% |
| 3982264 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.73 | 68.0 | 6.50e-01 | 100.0% | 96.0% |
| 5026546 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.73 | 68.0 | 6.41e-01 | 100.0% | 98.9% |
| 4972958 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.73 | 68.0 | 6.38e-01 | 100.0% | 97.8% |
| 5051264 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.72 | 67.0 | 6.44e-01 | 100.0% | 97.7% |
| 5030633 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.72 | 67.0 | 6.26e-01 | 100.0% | 95.7% |
| 3937447 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.72 | 67.0 | 6.00e-01 | 100.0% | 95.2% |
| None | — | 0.72 | 67.0 | 6.43e-01 | 100.0% | 98.9% | |
| 3674751 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.72 | 67.0 | 5.91e-01 | 100.0% | 97.7% |
| 3731250 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.72 | 68.0 | 6.12e-01 | 100.0% | 96.0% |
| None | — | 0.72 | 67.0 | 6.29e-01 | 100.0% | 97.3% | |
| 4948034 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.72 | 67.0 | 6.27e-01 | 100.0% | 96.2% |
| 3179394 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.72 | 67.0 | 5.70e-01 | 100.0% | 97.5% |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.72 | 67.0 | 6.31e-01 | 100.0% | 99.4% |
| None | — | 0.71 | 63.0 | 6.09e-01 | 93.5% | 99.4% | |
| None | — | 0.71 | 66.0 | 6.23e-01 | 100.0% | 97.3% | |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.71 | 66.0 | 6.24e-01 | 100.0% | 97.8% |
| 3531648 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.71 | 66.0 | 6.27e-01 | 100.0% | 98.9% |
| 4949121 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.71 | 66.0 | 6.26e-01 | 100.0% | 97.8% |
| 4929565 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.71 | 66.0 | 6.26e-01 | 100.0% | 97.8% |
| 4019568 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.71 | 66.0 | 6.11e-01 | 100.0% | 98.4% |
| 5010662 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.71 | 66.0 | 6.19e-01 | 100.0% | 96.2% |
| 5047137 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.71 | 66.0 | 6.16e-01 | 100.0% | 96.8% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.71 | 65.0 | 6.10e-01 | 98.7% | 94.6% |
| 4994515 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.71 | 66.0 | 6.22e-01 | 100.0% | 98.3% |
| 4967857 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.71 | 64.0 | 6.07e-01 | 97.4% | 97.8% |
| 4930187 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.70 | 65.0 | 6.08e-01 | 100.0% | 96.3% |
| 3548767 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.70 | 66.0 | 6.35e-01 | 100.0% | 94.7% |
| 5067404 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.70 | 65.0 | 6.11e-01 | 100.0% | 96.2% |
| 3205096 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.70 | 65.0 | 6.10e-01 | 100.0% | 96.8% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.70 | 65.0 | 6.07e-01 | 100.0% | 98.4% |
| 3181856 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.69 | 64.0 | 5.60e-01 | 100.0% | 96.4% |
| 4979619 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.69 | 61.0 | 5.86e-01 | 92.8% | 98.8% |
| 3495739 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.67 | 51.0 | 5.26e-01 | 78.4% | 95.9% |
| 3497100 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.57 | 52.0 | 4.39e-01 | 97.4% | 98.0% |
| 3611297 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.55 | 48.0 | 4.99e-01 | 95.4% | 97.9% |
| 3462193 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.55 | 26.0 | 3.05e-01 | 74.5% | 61.9% |
| 3891047 | 10.12.1.44 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD | 0.53 | 39.0 | 3.38e-01 | 74.5% | 77.4% |
| 3839740 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 43.0 | 4.54e-01 | 95.4% | 95.7% |
| 4951829 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.51 | 25.0 | 3.61e-01 | 71.9% | 98.7% |
D2
medium
residues 242-284
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lysA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.70 | 60.0 | 4.59e-01 | 100.0% | 58.1% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.69 | 57.0 | 4.39e-01 | 100.0% | 89.8% |
| 4jykA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 46.0 | 4.20e-01 | 74.4% | 86.2% |
| 2gk6A03 | 6.10.140.1240 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 46.0 | 4.52e-01 | 88.4% | 72.0% |
| 3ihjA02 | 1.10.287.1970 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 44.0 | 4.61e-01 | 74.4% | 89.5% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.62 | 42.0 | 3.82e-01 | 72.1% | 52.5% |
| 4yozA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 52.0 | 3.41e-01 | 100.0% | 47.8% |
| 1oheA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 50.0 | 3.39e-01 | 95.3% | 27.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3428875 | 109.4.1.1274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long | 0.75 | 61.0 | 3.48e-01 | 97.7% | 8.7% |
| 3632052 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 63.0 | 4.03e-01 | 100.0% | 34.9% |
| 3163958 | 507.1.1.2 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaG_DnaB_bind | 0.72 | 62.0 | 4.34e-01 | 100.0% | 80.0% |
| 3633621 | 192.5.1.16 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PF26729 | 0.66 | 58.0 | 4.74e-01 | 100.0% | 55.0% |
| 4370721 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.60 | 52.0 | 2.89e-01 | 97.7% | 7.5% |
D3
medium
residues 288-332