←Back to structures

MT310855.1__QJD50038.1__SEA_RASOVI_64__00063

Bact-Vir

MT310855.1__QJD50038.1__SEA_RASOVI_64__00063

Identity

Accession:
MT310855 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Goodmanvirus› Microbacterium_phage_Rasovi

TaxID: 2725621

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-83
PDB
Domain cluster: rep: MK279841.1__AZS06678.1__SEA_HIYAA_38__00038__D115-177
D2 high residues 92-155
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.59 47.0 3.51e-01 96.9% 32.6%
3zh5A00 2.40.128.710 Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E 0.58 47.0 3.82e-01 92.2% 44.7%
1rtuA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.55 46.0 3.90e-01 96.9% 81.6%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.54 35.0 3.88e-01 82.8% 95.7%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.54 36.0 3.74e-01 76.6% 75.4%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 42.0 3.26e-01 89.1% 42.2%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.53 43.0 3.63e-01 98.4% 87.1%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.52 35.0 3.23e-01 95.3% 51.7%
7zxkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.42e-01 79.7% 76.3%
6muwJ00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 39.0 2.82e-01 84.4% 94.6%
5mmjp00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.52 37.0 3.44e-01 87.5% 60.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.32e-01 93.8% 53.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4585899 4.1.1.312 ↗ beta barrels › SH3 › SH3 › SH3 › Med13_N 0.59 48.0 3.80e-01 92.2% 76.4%
3633817 221.4.1.21 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › PF30669 0.57 46.0 2.97e-01 96.9% 18.4%
3247318 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.46e-01 95.3% 41.5%
3673071 7516.1.1.16 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_43 0.56 43.0 2.98e-01 89.1% 25.5%
3610755 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 39.0 3.33e-01 89.1% 43.5%
4523548 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.54 46.0 4.24e-01 100.0% 77.6%
3659556 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.53 36.0 3.85e-01 79.7% 100.0%
4576422 375.1.1.84 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_15 0.53 44.0 4.32e-01 93.8% 88.6%
3253077 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 41.0 3.33e-01 89.1% 77.8%
4013926 9.4.1.4 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › PF26335 0.52 42.0 3.36e-01 92.2% 47.1%
3526525 5.1.3.161 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_6 0.51 41.0 2.77e-01 98.4% 21.1%