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MT310858.1__QJD50271.1__SEA_IWOKEUPLIKEDIS_68__00068

Bact-Vir

MT310858.1__QJD50271.1__SEA_IWOKEUPLIKEDIS_68__00068

Identity

Accession:
MT310858 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Turbidovirus› Mycobacterium_phage_Iwokeuplikedis

TaxID: 2725624

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-106
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25682.2 best Phage_VG64 129.9 6.90e-38 100.0% 62.2%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.66 45.0 4.90e-01 92.7% 87.9%
1c3kA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.61 44.0 3.68e-01 75.6% 97.2%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 43.0 3.83e-01 91.5% 51.3%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 34.0 3.07e-01 80.5% 38.1%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.52e-01 93.9% 100.0%
5itqA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.58 49.0 4.21e-01 93.9% 69.7%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 4.01e-01 82.9% 87.8%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.72e-01 100.0% 72.2%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 4.62e-01 92.7% 88.3%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.57 42.0 3.17e-01 78.0% 45.1%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.56 42.0 4.23e-01 80.5% 95.2%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.90e-01 82.9% 77.5%
3aabB00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 39.0 3.61e-01 73.2% 75.5%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 4.49e-01 98.8% 80.9%
7l0jB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 35.0 3.43e-01 79.3% 61.8%
3udfA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 43.0 2.87e-01 90.2% 62.5%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.53 37.0 3.13e-01 72.0% 81.0%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 41.0 3.91e-01 82.9% 70.5%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.53 41.0 3.07e-01 82.9% 78.5%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 45.0 3.25e-01 98.8% 88.2%
1w5dA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 40.0 2.86e-01 89.0% 27.0%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.53 38.0 3.58e-01 95.1% 59.6%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.55e-01 90.2% 71.2%
3hlbD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 43.0 2.76e-01 90.2% 51.7%
4oocA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.52 40.0 2.86e-01 85.4% 53.0%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 37.0 3.52e-01 76.8% 94.0%
6kjhA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 44.0 2.97e-01 100.0% 94.0%
1ci9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 42.0 2.75e-01 90.2% 67.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 4.03e-01 89.0% 100.0%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 42.0 3.67e-01 93.9% 81.2%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.51e-01 100.0% 56.7%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.71e-01 95.1% 80.8%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 38.0 3.47e-01 79.3% 88.9%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.65e-01 82.9% 82.9%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.76e-01 93.9% 84.5%
4jysB00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 43.0 3.94e-01 97.6% 78.9%
3eqvA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 41.0 3.46e-01 87.8% 62.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000208 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.69 47.0 3.33e-01 70.7% 81.6%
3407008 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 35.0 3.54e-01 85.4% 50.6%
3871253 220.1.1.122 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › C2_SHIP1-2_first 0.65 46.0 3.88e-01 74.4% 75.7%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.64 44.0 4.01e-01 72.0% 95.5%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.61 45.0 4.90e-01 95.1% 100.0%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.97e-01 96.3% 100.0%
3272930 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.27e-01 100.0% 61.7%
4968615 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 50.0 4.18e-01 96.3% 54.8%
4970754 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.57 51.0 4.53e-01 100.0% 84.2%
3842576 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.56 45.0 4.05e-01 89.0% 73.3%
3462119 9.1.1.23 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N 0.56 49.0 3.82e-01 100.0% 96.8%
185144 11.1.1.146 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3244 0.55 47.0 4.49e-01 98.8% 80.9%
3923143 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.54 45.0 3.22e-01 90.2% 61.3%
4175824 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.54 38.0 4.27e-01 91.5% 92.3%
3513185 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 41.0 3.27e-01 80.5% 84.5%
4177916 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.53 47.0 3.69e-01 96.3% 75.8%
4019681 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 47.0 3.86e-01 95.1% 69.3%
3741856 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.53 43.0 3.69e-01 90.2% 69.6%
3740122 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.53 45.0 3.94e-01 100.0% 82.7%
3946522 9.1.1.36 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 0.53 46.0 3.79e-01 100.0% 94.2%
3893067 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 44.0 3.82e-01 93.9% 61.7%
3673362 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.52 42.0 3.44e-01 90.2% 71.2%
3631387 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 35.0 3.84e-01 86.6% 82.9%
3522591 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.52 42.0 2.89e-01 90.2% 32.7%
3863267 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 44.0 4.15e-01 95.1% 76.0%
3547482 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.52 42.0 3.36e-01 90.2% 57.6%
5054163 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 4.16e-01 98.8% 86.4%
3564452 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.51 42.0 2.37e-01 90.2% 10.0%
3213025 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 45.0 3.47e-01 100.0% 89.5%
3927305 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.62e-01 85.4% 90.0%
3257304 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.51 41.0 3.84e-01 90.2% 82.9%
3257660 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.84e-01 96.3% 85.6%
3409908 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 43.0 4.22e-01 95.1% 84.4%
3929673 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.50 42.0 3.40e-01 90.2% 100.0%
55 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.50 44.0 3.38e-01 100.0% 46.4%