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MT310859.1__QJD50335.1__SEA_MARKPHEW_35__00033

Bact-Vir

MT310859.1__QJD50335.1__SEA_MARKPHEW_35__00033

Identity

Accession:
MT310859 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Anayavirus› Mycobacterium_phage_MarkPhew

TaxID: 2725625

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-85
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 44.0 4.74e-01 100.0% 94.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 46.0 4.40e-01 100.0% 67.9%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.59 50.0 4.43e-01 98.4% 77.3%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.59 46.0 4.49e-01 98.4% 80.3%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 41.0 3.42e-01 73.0% 70.6%
1adeA02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.58 48.0 4.22e-01 96.8% 94.0%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.58 44.0 3.98e-01 87.3% 77.9%
3i5gC02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 44.0 4.31e-01 90.5% 98.6%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.91e-01 96.8% 72.3%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.27e-01 92.1% 90.7%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 44.0 3.67e-01 95.2% 88.4%
2lpnA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.54 45.0 3.92e-01 100.0% 63.8%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 41.0 3.30e-01 87.3% 54.0%
4bopB00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 42.0 3.28e-01 95.2% 74.0%
3t57A02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.51 39.0 3.77e-01 87.3% 94.7%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.50 35.0 3.76e-01 77.8% 83.9%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.50 37.0 3.77e-01 82.5% 93.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3627829 3198.1.1.1 ↗ alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.72 56.0 4.48e-01 85.7% 52.8%
3222274 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.71 56.0 4.88e-01 88.9% 65.0%
3925313 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.70 57.0 5.29e-01 90.5% 83.7%
3268175 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.67 54.0 5.15e-01 90.5% 88.0%
3897956 198.1.1.18 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA, SapB_2, SapB_1, Saposin 0.66 53.0 4.44e-01 90.5% 57.4%
3886268 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.66 57.0 4.82e-01 100.0% 84.5%
3936293 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.66 54.0 4.80e-01 93.7% 71.6%
3551902 3919.1.1.4 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD1_N 0.65 58.0 4.83e-01 100.0% 81.8%
3668968 148.1.1.3 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone,Histone_H2A_C 0.63 49.0 3.84e-01 88.9% 84.1%
1566530 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.62 52.0 4.86e-01 96.8% 82.7%
4936146 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.62 48.0 5.05e-01 84.1% 100.0%
3273958 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.61 51.0 4.72e-01 96.8% 78.8%
4271388 101.1.1.323 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF29491 0.61 51.0 4.00e-01 100.0% 74.2%
5009371 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.61 52.0 4.26e-01 100.0% 82.4%
4978129 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.60 45.0 2.76e-01 85.7% 12.4%
3252439 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.60 49.0 4.61e-01 93.7% 83.7%
3293154 101.1.2.472 ↗ alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.60 44.0 4.54e-01 96.8% 85.0%
3249014 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.60 46.0 4.75e-01 87.3% 96.7%
5017220 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.57e-01 85.7% 84.6%
3248091 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.58 49.0 4.51e-01 100.0% 78.8%
3897957 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.58 47.0 4.44e-01 95.2% 78.8%
3261028 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.57 46.0 4.31e-01 95.2% 77.6%
3932714 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.57 47.0 4.27e-01 96.8% 74.4%
3277060 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.57 47.0 4.50e-01 96.8% 89.3%
5050625 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 3.41e-01 87.3% 43.9%
3579249 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 4.19e-01 100.0% 69.4%
3262552 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.56 45.0 4.40e-01 100.0% 82.7%
3286921 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.55 44.0 3.64e-01 93.7% 88.0%
4973692 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.53 46.0 4.00e-01 100.0% 65.0%
3862340 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.52 41.0 3.91e-01 88.9% 78.7%
3263473 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.52 42.0 3.93e-01 90.5% 82.5%
3257352 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.51 41.0 3.92e-01 95.2% 86.3%