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MT310859.1__QJD50381.1__SEA_MARKPHEW_81__00079

Bact-Vir

MT310859.1__QJD50381.1__SEA_MARKPHEW_81__00079

Identity

Accession:
MT310859 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-46
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.76 57.0 6.02e-01 88.9% 94.9%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.76 53.0 5.87e-01 100.0% 100.0%
2fipA00 3.30.70.3560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phi-29-like late genes activator, P4 0.72 49.0 3.61e-01 71.1% 93.9%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 47.0 5.02e-01 97.8% 100.0%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 44.0 4.35e-01 71.1% 60.0%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.67 47.0 4.85e-01 75.6% 81.4%
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.66 52.0 4.93e-01 91.1% 87.7%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 50.0 4.87e-01 88.9% 96.1%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.64 45.0 4.26e-01 75.6% 100.0%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 46.0 4.34e-01 82.2% 63.6%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 42.0 4.64e-01 71.1% 100.0%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 44.0 3.81e-01 71.1% 42.7%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 47.0 4.29e-01 86.7% 71.2%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 42.0 3.69e-01 77.8% 43.8%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 42.0 2.48e-01 71.1% 19.0%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.60 43.0 3.55e-01 82.2% 39.6%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.60 42.0 3.97e-01 75.6% 91.2%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 4.13e-01 71.1% 93.6%
2atcB02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.60 45.0 4.33e-01 82.2% 96.2%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.59 44.0 3.12e-01 84.4% 81.8%
6whjD00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 42.0 2.58e-01 77.8% 47.7%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 44.0 2.61e-01 86.7% 21.2%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 43.0 4.07e-01 80.0% 69.6%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.58 41.0 3.00e-01 73.3% 49.2%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.57 46.0 4.24e-01 100.0% 76.9%
3e07A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.57 43.0 3.58e-01 88.9% 94.4%
4c3iG02 2.40.50.1060 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 2.91e-01 84.4% 25.2%
4qiwB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.56 44.0 3.19e-01 97.8% 76.1%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 42.0 2.66e-01 86.7% 92.9%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 40.0 3.22e-01 93.3% 89.3%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 33.0 3.01e-01 97.8% 37.1%
1zkkB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 45.0 3.14e-01 97.8% 72.0%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 3.05e-01 80.0% 93.6%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.53 36.0 2.79e-01 71.1% 61.9%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.53 42.0 2.97e-01 100.0% 41.5%
4xsqB00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.52 40.0 2.73e-01 86.7% 50.3%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 2.99e-01 91.1% 62.4%
2js3A01 1.10.287.780 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains 0.52 40.0 3.56e-01 95.6% 60.5%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 2.78e-01 73.3% 41.7%
3kflA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.51 37.0 2.87e-01 84.4% 63.6%
3kmaA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.51 39.0 3.05e-01 86.7% 88.6%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 37.0 2.83e-01 91.1% 73.8%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 33.0 2.34e-01 97.8% 18.2%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 40.0 2.56e-01 100.0% 34.6%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 35.0 2.76e-01 84.4% 40.1%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 41.0 2.53e-01 97.8% 36.0%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404953 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.79 62.0 6.55e-01 91.1% 97.5%
3992209 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.79 63.0 6.31e-01 93.3% 88.9%
3507504 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.78 53.0 5.33e-01 73.3% 71.1%
3583479 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.75 59.0 6.13e-01 93.3% 97.5%
3517343 386.1.1.307 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29712 0.74 58.0 4.05e-01 91.1% 26.7%
3412273 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.73 49.0 5.34e-01 73.3% 91.4%
3228875 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 56.0 5.27e-01 97.8% 70.9%
3790839 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.72 48.0 4.64e-01 71.1% 62.0%
3819067 386.1.1.207 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 0.71 60.0 5.42e-01 100.0% 83.1%
3553698 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.71 47.0 4.73e-01 75.6% 68.9%
3494554 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 57.0 4.50e-01 91.1% 51.6%
3992660 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.56e-01 100.0% 83.6%
3398989 386.1.1.133 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 0.70 56.0 4.51e-01 97.8% 44.2%
4889754 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.69 55.0 5.08e-01 91.1% 70.0%
3674411 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.69 57.0 5.45e-01 97.8% 98.2%
3923282 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.69 48.0 5.21e-01 75.6% 100.0%
3473633 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.69 48.0 5.19e-01 75.6% 97.1%
3484397 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.68 47.0 5.00e-01 75.6% 94.3%
3300668 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.68 55.0 4.82e-01 91.1% 88.6%
3323471 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.68 57.0 5.39e-01 97.8% 90.9%
4554167 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.68 49.0 4.28e-01 82.2% 50.0%
3902529 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.68 48.0 5.13e-01 75.6% 100.0%
3485486 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.68 47.0 4.45e-01 73.3% 60.0%
3586791 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.67 46.0 4.96e-01 73.3% 91.4%
3410783 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.67 46.0 4.62e-01 75.6% 71.1%
3576110 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.67 51.0 4.10e-01 88.9% 41.1%
3344139 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 56.0 5.34e-01 97.8% 90.9%
1033394 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.67 50.0 4.85e-01 82.2% 74.0%
3689945 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.67 56.0 3.38e-01 97.8% 77.5%
2352 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 44.0 4.78e-01 75.6% 97.0%
3749834 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.66 56.0 5.28e-01 95.6% 100.0%
3328886 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 46.0 4.42e-01 75.6% 67.3%
3550766 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.66 46.0 4.84e-01 75.6% 85.0%
3229548 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 41.0 4.14e-01 77.8% 62.2%
3781064 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.66 48.0 4.30e-01 84.4% 55.7%
2516780 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 47.0 4.09e-01 82.2% 48.0%
3259112 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.65 45.0 4.82e-01 80.0% 97.1%
4013235 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.65 45.0 4.33e-01 75.6% 60.0%
3265851 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.64 44.0 4.60e-01 77.8% 80.0%
3228859 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.64 44.0 4.77e-01 73.3% 94.3%
3484105 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.64 45.0 3.12e-01 73.3% 52.0%
3194124 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.64 51.0 3.32e-01 93.3% 19.6%
3263562 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.64 49.0 4.64e-01 86.7% 72.7%
3217609 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.64 44.0 4.52e-01 77.8% 76.7%
3708672 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 44.0 3.60e-01 75.6% 37.6%
3410137 4252.1.1.11 beta barrels › AttH-like › AttH-like › AttH-like › DUF4464 0.64 52.0 3.87e-01 91.1% 70.3%
1614032 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 43.0 4.51e-01 73.3% 83.8%
3451552 375.1.4.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 0.63 47.0 4.46e-01 82.2% 92.6%
4003256 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 52.0 5.13e-01 95.6% 90.0%
4012190 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 52.0 3.18e-01 97.8% 77.8%
3734500 261.1.1.0 a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.63 52.0 2.98e-01 100.0% 10.5%
3613670 64.1.1.14 beta meanders › WW domain-like › WW domain › WW domain › PF30846 0.63 45.0 3.84e-01 82.2% 45.0%
3193273 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 51.0 2.90e-01 95.6% 13.5%
3501387 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 47.0 2.91e-01 84.4% 14.1%
3874056 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.62 51.0 4.82e-01 93.3% 98.2%
3394681 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.62 44.0 4.49e-01 80.0% 77.8%
3610398 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 44.0 3.79e-01 75.6% 46.7%
4026741 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 49.0 3.20e-01 93.3% 75.7%
3994420 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 42.0 4.43e-01 71.1% 91.4%
2664740 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.62 43.0 4.14e-01 75.6% 65.5%
3624687 64.1.1.9 beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.61 42.0 4.13e-01 73.3% 64.0%
2740640 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.61 43.0 4.00e-01 75.6% 61.0%
2527712 64.1.1.2 beta meanders › WW domain-like › WW domain › WW domain › WW,Dendrin 0.61 47.0 4.30e-01 88.9% 62.5%
3568187 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.61 42.0 4.52e-01 77.8% 94.3%
4433750 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 51.0 3.02e-01 100.0% 92.8%
3473634 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.61 42.0 4.51e-01 75.6% 100.0%
4561170 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.61 43.0 2.50e-01 73.3% 15.6%
3545741 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.59 44.0 4.40e-01 82.2% 84.4%
4322686 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.59 49.0 4.45e-01 100.0% 70.8%
3706889 109.4.1.20 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR 0.59 44.0 2.70e-01 84.4% 24.7%
4562940 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.59 43.0 2.56e-01 77.8% 18.3%
3940294 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 43.0 2.45e-01 82.2% 12.2%
3375181 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.58 42.0 3.03e-01 80.0% 67.6%
1348634 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.58 43.0 4.07e-01 80.0% 69.6%
3748902 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.58 43.0 3.86e-01 86.7% 57.1%
3253285 304.8.1.76 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF28943 0.56 42.0 3.07e-01 91.1% 30.0%
4459875 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.55 42.0 4.15e-01 91.1% 91.8%
3761305 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.55 45.0 3.03e-01 100.0% 82.0%
4559071 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.54 40.0 3.74e-01 88.9% 67.7%
3738632 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.36e-01 86.7% 16.2%
5025956 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 40.0 2.90e-01 91.1% 89.3%