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MT310860.1__QJD50404.1__SEA_CHRIS_1__00001
Bact-VirMT310860.1__QJD50404.1__SEA_CHRIS_1__00001
Identity
- Accession:
- MT310860 ↗
- Kingdom:
- phage
Quality
66.5
mean pLDDT
Taxonomy
TaxID: 2725626
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-100
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24182.2 best | G1RFP | 49.0 | 5.00e-13 | 41.6% | 100.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ss3A00 | 1.10.287.720 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pollen allergen ole e 6 | 0.66 | 37.0 | 4.31e-01 | 80.5% | 84.0% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.60 | 35.0 | 4.13e-01 | 70.1% | 97.8% |
| 3nxcA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 52.0 | 4.05e-01 | 100.0% | 49.2% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.59 | 43.0 | 3.22e-01 | 76.6% | 58.6% |
| 2w00A02 | 3.90.640.50 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.57 | 37.0 | 3.83e-01 | 75.3% | 69.9% |
| 1kqfA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 45.0 | 3.21e-01 | 87.0% | 66.9% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.56 | 40.0 | 3.23e-01 | 76.6% | 57.4% |
| 4cgyA02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.55 | 45.0 | 3.43e-01 | 92.2% | 57.4% |
| 7o06C01 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.54 | 44.0 | 4.21e-01 | 100.0% | 76.9% |
| 1fthA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.54 | 38.0 | 3.28e-01 | 88.3% | 47.9% |
| 1nt4A02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 37.0 | 3.07e-01 | 89.6% | 40.1% |
| 2uvaG11 | 6.10.60.10 | Special › Helix non-globular › Hydrophobic Seed Protein › | 0.52 | 34.0 | 3.88e-01 | 81.8% | 96.4% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.51 | 39.0 | 3.79e-01 | 83.1% | 81.8% |
| 5dcaA11 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.34e-01 | 76.6% | 61.0% |
| 3dlcA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 42.0 | 3.17e-01 | 98.7% | 59.8% |
| 1ka8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.37e-01 | 88.3% | 59.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4939754 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.87 | 61.0 | 4.46e-01 | 72.7% | 79.4% |
| 5016694 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.86 | 61.0 | 4.74e-01 | 72.7% | 74.7% |
| 3602632 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.86 | 60.0 | 4.42e-01 | 72.7% | 80.0% |
| 5054487 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.85 | 60.0 | 4.67e-01 | 72.7% | 82.0% |
| 3971686 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.84 | 60.0 | 4.81e-01 | 74.0% | 82.9% |
| 3278996 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 54.0 | 4.93e-01 | 70.1% | 77.0% |
| 3989953 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.75 | 52.0 | 3.49e-01 | 72.7% | 20.1% |
| 4198171 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.73 | 52.0 | 3.51e-01 | 75.3% | 21.5% |
| 3274209 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.65 | 58.0 | 4.53e-01 | 100.0% | 71.5% |
| 169747 | 4950.1.1.1 ↗ | alpha complex topology › Botulinum neurotoxin A heavy chain › Botulinum neurotoxin A heavy chain › Botulinum neurotoxin A heavy chain › Toxin_trans | 0.65 | 44.0 | 2.81e-01 | 71.4% | 34.6% |
| 3651379 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 47.0 | 3.84e-01 | 90.9% | 42.1% |
| 4926879 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.64 | 56.0 | 4.56e-01 | 100.0% | 76.7% |
| 4943027 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.62 | 55.0 | 4.40e-01 | 100.0% | 75.5% |
| 3291667 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.61 | 51.0 | 4.13e-01 | 93.5% | 64.0% |
| 3243948 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.60 | 53.0 | 3.93e-01 | 100.0% | 43.0% |
| 3405298 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.57 | 49.0 | 3.40e-01 | 98.7% | 67.6% |
| 3956275 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.56 | 38.0 | 3.93e-01 | 71.4% | 75.7% |
| 3588436 | 3236.1.1.3 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Mem_trans | 0.56 | 47.0 | 3.09e-01 | 93.5% | 77.9% |
| 5058794 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.56 | 27.0 | 3.00e-01 | 88.3% | 55.4% |
| 3733384 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 49.0 | 2.93e-01 | 97.4% | 32.2% |
| 4208242 | 109.4.1.451 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 | 0.55 | 48.0 | 2.89e-01 | 100.0% | 29.6% |
| 4938196 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.54 | 43.0 | 3.91e-01 | 88.3% | 95.2% |
| 4932779 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.54 | 43.0 | 4.03e-01 | 88.3% | 84.2% |
| 3911488 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.53 | 44.0 | 3.03e-01 | 92.2% | 73.1% |
| 3541293 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.44e-01 | 71.4% | 96.7% |
| 2966548 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.52 | 45.0 | 3.51e-01 | 100.0% | 57.9% |
| 3940179 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 39.0 | 3.06e-01 | 89.6% | 88.9% |