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MT310898.1__QJD53807.1__SEA_KELA_247__00236

Bact-Vir

MT310898.1__QJD53807.1__SEA_KELA_247__00236

Identity

Accession:
MT310898 ↗
Kingdom:
phage

Quality

58.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-95
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2js9A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.71 50.0 5.14e-01 80.2% 77.8%
1exaA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.68 52.0 3.82e-01 82.6% 83.9%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.66 54.0 4.72e-01 97.7% 57.9%
1tf5A04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.66 42.0 3.30e-01 80.2% 30.8%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.64 55.0 5.07e-01 96.5% 81.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 52.0 4.53e-01 89.5% 60.9%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.64 49.0 4.30e-01 81.4% 60.8%
3ecsC01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.64 47.0 4.50e-01 79.1% 74.0%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.63 38.0 4.54e-01 76.7% 92.9%
3qatA01 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.63 54.0 3.97e-01 97.7% 59.3%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.62 43.0 4.76e-01 77.9% 98.4%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.62 40.0 4.47e-01 77.9% 85.1%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.62 42.0 4.37e-01 77.9% 75.3%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 48.0 5.08e-01 93.0% 100.0%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.61 51.0 4.44e-01 98.8% 59.0%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.61 49.0 4.46e-01 88.4% 91.4%
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.60 43.0 3.82e-01 74.4% 81.5%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 46.0 3.73e-01 80.2% 74.8%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.59 43.0 3.48e-01 89.5% 40.9%
1hk3A03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 52.0 5.09e-01 96.5% 92.4%
3pasA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 42.0 3.30e-01 74.4% 53.7%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.59 43.0 4.31e-01 90.7% 75.9%
2k3nA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.59 49.0 4.09e-01 94.2% 54.4%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.59 50.0 3.78e-01 96.5% 69.2%
2k3qA00 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.59 48.0 4.41e-01 93.0% 85.6%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.58 46.0 4.19e-01 96.5% 63.5%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.58 40.0 3.85e-01 70.9% 66.7%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 51.0 4.89e-01 98.8% 87.1%
4mo7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 43.0 3.66e-01 79.1% 56.3%
1fouA01 1.10.246.30 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 43.0 4.60e-01 80.2% 97.3%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 46.0 4.09e-01 98.8% 59.0%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 50.0 5.01e-01 100.0% 98.9%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.57 44.0 4.08e-01 81.4% 68.5%
4akgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.57 48.0 3.45e-01 96.5% 70.3%
3q1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.57 46.0 4.08e-01 94.2% 74.8%
6iw6B01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.56 48.0 3.70e-01 100.0% 91.3%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 47.0 4.73e-01 91.9% 98.8%
1u7gA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.55 47.0 3.17e-01 100.0% 70.2%
3o7qA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.55 42.0 3.34e-01 83.7% 82.3%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 44.0 3.92e-01 98.8% 59.8%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 48.0 4.05e-01 100.0% 67.1%
1vj7B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 47.0 3.81e-01 98.8% 70.5%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 43.0 4.39e-01 89.5% 93.8%
1txgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 40.0 3.39e-01 80.2% 47.1%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.54 39.0 3.05e-01 87.2% 33.5%
3thxB03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.53 46.0 3.70e-01 100.0% 76.1%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 43.0 4.17e-01 88.4% 80.4%
4z7xB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 46.0 3.56e-01 100.0% 59.1%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.52 43.0 4.31e-01 94.2% 91.9%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.52 45.0 3.84e-01 98.8% 66.4%
3frrA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.52 38.0 3.02e-01 77.9% 65.6%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.52 44.0 4.36e-01 97.7% 91.5%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.52 45.0 4.26e-01 96.5% 84.5%
1xl7A01 1.10.275.20 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Choline/Carnitine o-acyltransferase 0.52 40.0 3.83e-01 84.9% 79.6%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 42.0 4.04e-01 90.7% 79.8%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.50 44.0 4.05e-01 98.8% 97.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3216068 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.76 49.0 5.18e-01 76.7% 73.1%
350072 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.72 50.0 5.21e-01 79.1% 77.8%
3786647 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.70 50.0 5.22e-01 100.0% 81.2%
3455585 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.69 62.0 5.89e-01 98.8% 87.0%
3602354 1030.1.1.1 alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.68 56.0 5.02e-01 89.5% 74.2%
3617759 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.67 50.0 5.43e-01 98.8% 97.1%
4928737 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.67 60.0 5.85e-01 100.0% 97.9%
3176182 3881.1.1.1 alpha bundles › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › DUF3819 0.67 59.0 4.42e-01 97.7% 60.0%
3877844 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.65 53.0 5.29e-01 98.8% 87.8%
3675163 3881.1.1.1 alpha bundles › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › DUF3819 0.63 50.0 3.88e-01 87.2% 81.0%
4883033 1030.1.1.1 alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.62 49.0 4.52e-01 87.2% 89.4%
3180704 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.62 50.0 4.62e-01 100.0% 67.0%
3898240 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.62 50.0 4.44e-01 100.0% 60.8%
4937529 103.9.1.0 alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain 0.62 55.0 5.26e-01 100.0% 90.0%
3592846 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.62 52.0 5.05e-01 93.0% 90.5%
3938517 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.61 54.0 4.27e-01 100.0% 50.3%
5012706 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 53.0 4.90e-01 100.0% 74.8%
4983838 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.61 54.0 5.14e-01 98.8% 87.0%
3625186 627.1.1.2 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 0.60 50.0 4.79e-01 91.9% 87.0%
5066162 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.60 48.0 4.62e-01 89.5% 80.0%
4452139 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.60 52.0 4.41e-01 100.0% 64.7%
3591288 604.12.1.8 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.59 47.0 4.19e-01 86.0% 67.2%
4995769 102.1.2.10 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage 0.59 49.0 3.51e-01 97.7% 38.7%
4993731 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.58 46.0 4.40e-01 89.5% 76.2%
4943370 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 50.0 3.26e-01 98.8% 29.9%
3971841 3552.1.1.1 alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › DUF2063 0.57 47.0 4.27e-01 96.5% 65.6%
3689691 101.1.10.61 alpha arrays › HTH › HTH › Cyclin-like › Clr5 0.57 46.0 4.71e-01 100.0% 91.8%
3766089 633.7.1.4 alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like › PIEZO 0.57 46.0 3.83e-01 88.4% 59.4%
4020908 180.1.1.0 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.57 46.0 3.79e-01 88.4% 51.2%
4298587 140.1.1.0 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.56 42.0 3.40e-01 80.2% 57.1%
3934092 5081.1.1.0 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like 0.56 46.0 3.68e-01 91.9% 88.3%
3988033 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 42.0 3.34e-01 81.4% 91.4%
4003844 148.1.3.22 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_5 0.56 45.0 4.21e-01 90.7% 86.4%
3586873 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 41.0 3.98e-01 80.2% 100.0%
3723362 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 42.0 3.18e-01 82.6% 58.6%
4121494 5045.1.1.1 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.54 47.0 3.65e-01 100.0% 76.4%
5020412 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.53 40.0 3.86e-01 84.9% 87.6%
5009673 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.58e-01 93.0% 49.1%
3649603 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 3.41e-01 97.7% 47.6%
3412884 109.4.1.843 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM 0.52 45.0 2.96e-01 98.8% 41.0%
3705127 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.52 41.0 4.06e-01 89.5% 78.9%
4952942 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 43.0 4.30e-01 97.7% 93.3%
3374895 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.51 45.0 3.94e-01 100.0% 68.1%
4928828 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.51 43.0 3.22e-01 95.3% 80.8%
3813149 5059.1.1.3 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.51 42.0 2.97e-01 96.5% 76.2%
3740103 101.1.10.2 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C_2 0.50 42.0 2.92e-01 93.0% 66.2%
3917085 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 36.0 3.52e-01 75.6% 88.4%
3951387 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.50 40.0 3.96e-01 93.0% 82.2%
D2 medium residues 101-161
PDB