←Back to structures

MT316461.1__QJD54056.1__SEA_GALACTICA_109__00108

Bact-Vir

MT316461.1__QJD54056.1__SEA_GALACTICA_109__00108

Identity

Accession:
MT316461 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hiyaavirus› Streptomyces_phage_Galactica

TaxID: 2725755

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-60
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.80 56.0 5.49e-01 81.1% 69.6%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.79 70.0 6.32e-01 100.0% 95.8%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 63.0 5.66e-01 100.0% 66.2%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 66.0 6.26e-01 100.0% 82.3%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 67.0 4.80e-01 100.0% 48.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.73 67.0 6.29e-01 100.0% 85.7%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 52.0 4.66e-01 83.0% 54.1%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.73 65.0 5.71e-01 100.0% 82.3%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 64.0 4.63e-01 100.0% 50.7%
3ptaA04 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.71 63.0 4.31e-01 100.0% 43.5%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 5.41e-01 100.0% 78.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 56.0 4.48e-01 98.1% 56.9%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 40.0 3.13e-01 77.4% 28.2%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.62 53.0 4.64e-01 100.0% 63.9%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 50.0 3.77e-01 94.3% 95.0%
2dyiA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.61 52.0 4.83e-01 100.0% 81.7%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 47.0 4.81e-01 92.5% 92.2%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 4.36e-01 90.6% 74.1%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 48.0 4.75e-01 100.0% 87.5%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 48.0 4.78e-01 100.0% 87.5%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 46.0 4.63e-01 100.0% 92.3%
5xamA03 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 48.0 3.72e-01 94.3% 95.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 46.0 4.44e-01 100.0% 76.6%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.57 39.0 2.93e-01 73.6% 48.4%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.59e-01 100.0% 85.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.45e-01 100.0% 81.8%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 46.0 3.78e-01 100.0% 48.2%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.56 46.0 3.63e-01 98.1% 57.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.48e-01 100.0% 87.1%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 46.0 4.52e-01 100.0% 91.5%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 47.0 4.48e-01 100.0% 89.1%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 43.0 4.37e-01 100.0% 94.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.34e-01 100.0% 87.3%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.11e-01 98.1% 67.2%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.54 45.0 3.71e-01 100.0% 64.2%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.53 42.0 4.01e-01 90.6% 78.5%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.08e-01 96.2% 77.0%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.04e-01 88.7% 51.8%
4fajA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.50 40.0 3.22e-01 96.2% 88.7%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 67.0 6.61e-01 100.0% 83.6%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 68.0 5.17e-01 100.0% 40.0%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 70.0 5.66e-01 100.0% 51.6%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 67.0 5.56e-01 100.0% 52.2%
3399422 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 66.0 5.42e-01 100.0% 49.5%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 66.0 6.55e-01 100.0% 85.5%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 65.0 5.03e-01 100.0% 40.9%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 58.0 5.76e-01 100.0% 74.5%
3660358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 65.0 6.25e-01 100.0% 78.3%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 71.0 3.86e-01 100.0% 7.3%
3570369 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 65.0 5.44e-01 100.0% 54.4%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 61.0 6.31e-01 100.0% 90.0%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 67.0 6.26e-01 100.0% 78.5%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 67.0 6.22e-01 100.0% 78.5%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 65.0 6.09e-01 100.0% 76.9%
3636028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 4.98e-01 100.0% 60.8%
3730835 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.75 67.0 5.46e-01 100.0% 55.8%
3720970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 4.69e-01 100.0% 51.0%
3182097 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 58.0 5.45e-01 86.8% 70.8%
4540278 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.72 63.0 5.19e-01 100.0% 55.9%
3172266 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.71 62.0 3.79e-01 100.0% 37.1%
4014568 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.71 55.0 5.50e-01 84.9% 81.8%
3174822 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.71 62.0 5.45e-01 100.0% 81.2%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.70 63.0 5.91e-01 100.0% 86.2%
3208838 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.69 60.0 4.33e-01 100.0% 51.0%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.03e-01 100.0% 73.3%
4592145 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.68 60.0 5.25e-01 100.0% 78.8%
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 60.0 5.38e-01 100.0% 71.6%
4015016 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 56.0 5.02e-01 98.1% 68.0%
3187166 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.66 56.0 4.79e-01 98.1% 60.0%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 56.0 4.88e-01 100.0% 74.1%
4017600 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 56.0 3.38e-01 100.0% 26.8%
3782925 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 54.0 4.55e-01 98.1% 65.3%
3622053 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 4.44e-01 100.0% 51.0%
4602848 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.63 51.0 4.32e-01 90.6% 75.6%
3631731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 3.94e-01 100.0% 52.0%
3275976 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.62 44.0 3.30e-01 75.5% 59.2%
3437430 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.60 48.0 4.57e-01 98.1% 73.8%
3389371 3775.1.1.1 ↗ beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.60 49.0 3.02e-01 100.0% 28.9%
4114201 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.59 47.0 4.51e-01 100.0% 75.4%
4405445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 44.0 4.06e-01 92.5% 61.4%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.56e-01 100.0% 76.9%
4163458 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.59 47.0 4.66e-01 98.1% 87.3%
3973362 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.59 45.0 4.08e-01 100.0% 60.0%
1030876 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 46.0 4.33e-01 100.0% 70.0%
4407054 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 47.0 4.61e-01 100.0% 83.3%
4456205 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 46.0 4.64e-01 100.0% 92.7%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 48.0 4.55e-01 100.0% 84.6%
3998942 220.1.1.162 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.57 49.0 3.74e-01 100.0% 77.7%
3698791 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 47.0 4.44e-01 100.0% 80.0%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 47.0 4.47e-01 100.0% 81.5%
3974565 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.57 42.0 4.03e-01 96.2% 67.7%
5078875 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.56 44.0 2.78e-01 98.1% 15.6%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.56 46.0 4.42e-01 100.0% 83.1%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.56 47.0 4.46e-01 100.0% 84.6%
3964608 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.56 48.0 4.42e-01 100.0% 78.6%
3787756 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 46.0 3.42e-01 100.0% 79.7%
3927520 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.55 46.0 3.98e-01 100.0% 85.6%
3225194 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 37.0 2.86e-01 71.7% 53.8%
3581254 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 39.0 3.91e-01 98.1% 76.4%
3938353 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.54 42.0 3.53e-01 88.7% 98.9%
4045121 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 43.0 3.90e-01 100.0% 81.2%
3797683 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.07e-01 84.9% 72.8%
3471641 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.34e-01 100.0% 72.0%