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MT325768.1__QJI52306.1__X__00009

Bact-Vir

MT325768.1__QJI52306.1__X__00009

Identity

Accession:
MT325768 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.73 52.0 4.50e-01 76.8% 85.2%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.71 61.0 5.04e-01 100.0% 79.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.68 58.0 4.76e-01 100.0% 78.9%
5aykA05 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.68 57.0 4.82e-01 100.0% 69.6%
1sjiA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.67 57.0 4.54e-01 100.0% 68.5%
5ykwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 53.0 4.50e-01 100.0% 66.0%
1xjcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 55.0 4.14e-01 100.0% 91.7%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 42.0 3.39e-01 76.8% 35.2%
1x5eA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 51.0 4.33e-01 100.0% 65.1%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.62 48.0 3.77e-01 91.1% 67.4%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.62 42.0 3.38e-01 73.2% 46.6%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 48.0 3.46e-01 85.7% 46.0%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 47.0 3.87e-01 85.7% 59.0%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.60 47.0 3.43e-01 92.9% 90.9%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 51.0 3.27e-01 100.0% 29.5%
8cvmg01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.60 44.0 4.13e-01 82.1% 97.3%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 42.0 3.65e-01 76.8% 47.2%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.20e-01 75.0% 53.0%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.59 39.0 3.45e-01 76.8% 46.3%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.58 45.0 4.12e-01 89.3% 92.6%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 2.92e-01 75.0% 53.1%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.58 46.0 3.31e-01 94.6% 40.3%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 48.0 3.88e-01 100.0% 77.3%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 39.0 3.14e-01 73.2% 63.0%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 44.0 3.94e-01 92.9% 90.1%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.57 47.0 3.19e-01 100.0% 91.0%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.56 43.0 3.91e-01 89.3% 85.9%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 40.0 3.14e-01 76.8% 87.9%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 4.27e-01 76.8% 97.9%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.37e-01 80.4% 62.4%
4ccvA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.78e-01 100.0% 78.3%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.56 42.0 2.58e-01 87.5% 35.2%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 45.0 3.16e-01 100.0% 96.9%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 39.0 3.69e-01 96.4% 60.9%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.55 41.0 3.25e-01 85.7% 45.5%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.54 44.0 3.23e-01 100.0% 86.0%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.54 42.0 3.44e-01 92.9% 75.6%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 37.0 3.13e-01 78.6% 41.2%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 45.0 3.38e-01 100.0% 90.1%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 44.0 3.70e-01 96.4% 76.8%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.52 44.0 2.84e-01 100.0% 24.3%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 36.0 3.07e-01 75.0% 40.0%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 43.0 3.60e-01 98.2% 81.5%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 43.0 3.46e-01 98.2% 55.6%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 42.0 2.97e-01 100.0% 98.6%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 41.0 3.02e-01 100.0% 79.9%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.52 37.0 3.65e-01 80.4% 95.3%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.75e-01 100.0% 97.7%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 36.0 2.83e-01 75.0% 65.9%
3d1cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 2.83e-01 98.2% 83.1%
4gqzA00 2.60.40.3700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.18e-01 100.0% 62.8%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 40.0 2.63e-01 85.7% 93.4%
6o15A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 40.0 2.81e-01 98.2% 61.8%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 36.0 2.63e-01 76.8% 90.0%
6n6qD00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 39.0 2.34e-01 92.9% 11.1%
3vp7A00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.50 43.0 3.09e-01 96.4% 39.2%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3296731 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.69 46.0 4.99e-01 82.1% 86.7%
4352331 101.1.2.788 alpha arrays › HTH › HTH › winged helix domain › PF29760 0.67 51.0 4.33e-01 82.1% 84.4%
4073557 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.67 57.0 4.80e-01 100.0% 84.0%
3838957 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.64 54.0 5.15e-01 100.0% 90.0%
1921563 101.1.2.175 alpha arrays › HTH › HTH › winged helix domain › HTH_57 0.64 46.0 3.83e-01 78.6% 73.8%
5049690 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 43.0 3.31e-01 71.4% 35.0%
4232128 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.63 42.0 3.74e-01 75.0% 47.5%
3823655 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.62 42.0 2.58e-01 75.0% 9.9%
3646130 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.61 43.0 2.83e-01 75.0% 16.9%
5072765 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.61 45.0 2.96e-01 80.4% 18.1%
3881061 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 49.0 4.73e-01 91.1% 95.4%
3708068 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 44.0 2.84e-01 76.8% 25.9%
4323652 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 48.0 3.99e-01 91.1% 57.1%
4944397 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 40.0 4.22e-01 71.4% 100.0%
3332079 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.60 42.0 2.55e-01 75.0% 10.4%
3992641 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.60 48.0 4.47e-01 89.3% 82.9%
3233686 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.59 41.0 3.06e-01 73.2% 57.2%
4011259 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.58 48.0 3.86e-01 96.4% 82.5%
5007741 2011.2.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › tRNA_deacylase 0.58 49.0 3.51e-01 100.0% 91.9%
4558826 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 49.0 4.41e-01 98.2% 95.0%
3209881 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.58 40.0 2.30e-01 73.2% 7.4%
3681835 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.58 40.0 2.41e-01 75.0% 9.2%
3451427 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 45.0 4.11e-01 89.3% 95.0%
3819668 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.58 39.0 4.28e-01 73.2% 86.4%
5036525 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.57 43.0 2.85e-01 82.1% 39.8%
3961639 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.57 39.0 3.85e-01 71.4% 96.7%
4932407 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.57 47.0 4.27e-01 96.4% 93.8%
4395529 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.56 41.0 3.56e-01 98.2% 50.0%
4098275 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.56 47.0 4.23e-01 96.4% 93.8%
4992470 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 36.0 3.55e-01 71.4% 63.3%
3626049 105.2.1.0 alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.55 43.0 2.84e-01 91.1% 34.1%
3865742 319.1.1.12 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS_DNAAF11_C 0.55 37.0 3.28e-01 76.8% 47.1%
5034412 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.54 37.0 2.61e-01 73.2% 38.9%
1712060 2003.1.5.85 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 39.0 2.78e-01 78.6% 34.2%
5001118 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.53 44.0 3.23e-01 96.4% 91.5%
3963900 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.53 37.0 3.31e-01 98.2% 49.4%
3508699 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 45.0 3.36e-01 100.0% 64.5%
3931934 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.52 44.0 4.22e-01 96.4% 84.6%
4392318 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.52 37.0 2.66e-01 76.8% 94.1%
3949940 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.51 40.0 3.55e-01 87.5% 63.5%
4926919 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 42.0 2.73e-01 100.0% 18.7%
3263507 3409.1.1.3 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 0.50 39.0 3.02e-01 91.1% 45.3%
4998264 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.50 40.0 3.56e-01 91.1% 67.1%
3294222 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.50 42.0 2.58e-01 98.2% 68.0%
3326297 2004.1.1.299 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.50 35.0 2.46e-01 76.8% 91.1%