←Back to structures
MT325768.1__QJI52340.1__X__00043
Bact-VirMT325768.1__QJI52340.1__X__00043
Identity
- Accession:
- MT325768 ↗
- Kingdom:
- phage
Quality
72.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-66
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2c7hA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.73 | 56.0 | 5.06e-01 | 84.1% | 62.8% |
| 3pvlA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.71 | 55.0 | 4.78e-01 | 84.1% | 78.1% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.71 | 56.0 | 4.90e-01 | 85.7% | 78.7% |
| 3w1sC00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.70 | 53.0 | 4.98e-01 | 82.5% | 72.4% |
| 3tcaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 51.0 | 4.62e-01 | 84.1% | 72.2% |
| 5ejrA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 50.0 | 4.56e-01 | 81.0% | 80.2% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 51.0 | 4.47e-01 | 84.1% | 71.9% |
| 1ou8A00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.65 | 51.0 | 4.33e-01 | 87.3% | 86.8% |
| 2gnrA01 | 6.10.30.10 | Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.64 | 47.0 | 4.59e-01 | 77.8% | 75.4% |
| 1v6eA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.64 | 48.0 | 4.51e-01 | 82.5% | 73.8% |
| 5xpcA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 50.0 | 4.63e-01 | 88.9% | 84.7% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 46.0 | 3.74e-01 | 79.4% | 88.7% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 48.0 | 3.97e-01 | 84.1% | 60.7% |
| 2ekiA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.63 | 47.0 | 4.23e-01 | 84.1% | 60.2% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 47.0 | 4.20e-01 | 85.7% | 64.3% |
| 1burS00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.62 | 47.0 | 3.83e-01 | 82.5% | 74.8% |
| 1gsaA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.62 | 46.0 | 4.61e-01 | 82.5% | 90.8% |
| 3afhA02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.61 | 48.0 | 4.13e-01 | 87.3% | 80.8% |
| 1x9nA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.61 | 49.0 | 4.53e-01 | 92.1% | 89.3% |
| 5t17A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.60 | 51.0 | 4.73e-01 | 100.0% | 83.5% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.60 | 52.0 | 4.38e-01 | 98.4% | 98.1% |
| 1jelP00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.59 | 50.0 | 4.61e-01 | 100.0% | 78.8% |
| 2vjwA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.58 | 51.0 | 4.00e-01 | 100.0% | 89.9% |
| 6bwsB00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.58 | 50.0 | 3.94e-01 | 98.4% | 96.4% |
| 6btdA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.58 | 49.0 | 3.53e-01 | 100.0% | 81.8% |
| 4clcA00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.57 | 50.0 | 3.70e-01 | 100.0% | 74.6% |
| 1fu0A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.57 | 48.0 | 4.44e-01 | 100.0% | 80.5% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 48.0 | 3.96e-01 | 96.8% | 90.7% |
| 1ktbA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 42.0 | 3.81e-01 | 84.1% | 60.4% |
| 3cwfA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 43.0 | 3.62e-01 | 84.1% | 74.1% |
| 2yuxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 47.0 | 4.05e-01 | 100.0% | 74.1% |
| 1yprA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.55 | 47.0 | 3.79e-01 | 96.8% | 95.2% |
| 6kghA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 46.0 | 3.60e-01 | 100.0% | 83.8% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.55 | 39.0 | 4.03e-01 | 76.2% | 84.7% |
| 2a2lC00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.54 | 46.0 | 3.66e-01 | 100.0% | 89.5% |
| 2oviA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.54 | 43.0 | 3.31e-01 | 90.5% | 69.6% |
| 2yuwA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.96e-01 | 98.4% | 82.7% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.54 | 35.0 | 3.84e-01 | 77.8% | 85.7% |
| 2l72A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 36.0 | 3.04e-01 | 71.4% | 72.0% |
| 3l2pA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 38.0 | 3.22e-01 | 79.4% | 97.5% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 43.0 | 3.18e-01 | 96.8% | 93.9% |
| 4mb4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 41.0 | 3.88e-01 | 96.8% | 69.6% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.53 | 38.0 | 3.15e-01 | 79.4% | 80.3% |
| 3jciA00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.52 | 39.0 | 2.90e-01 | 85.7% | 56.3% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 39.0 | 4.05e-01 | 81.0% | 89.8% |
| 1dc1A01 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.50 | 41.0 | 2.97e-01 | 100.0% | 78.8% |
| 1pgl100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 38.0 | 2.75e-01 | 82.5% | 89.7% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3594994 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.79 | 61.0 | 5.31e-01 | 84.1% | 75.8% |
| 3753075 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.73 | 57.0 | 5.16e-01 | 84.1% | 76.5% |
| 3239281 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.71 | 55.0 | 4.21e-01 | 85.7% | 38.9% |
| 3699077 | 221.1.1.25 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › APG12 | 0.71 | 56.0 | 5.00e-01 | 87.3% | 71.1% |
| 3582714 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.70 | 55.0 | 4.84e-01 | 85.7% | 74.7% |
| 3237024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.69 | 55.0 | 4.48e-01 | 88.9% | 96.7% |
| 3781061 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.69 | 53.0 | 4.88e-01 | 85.7% | 69.4% |
| 4972199 | 221.7.1.0 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 | 0.69 | 59.0 | 5.53e-01 | 98.4% | 79.7% |
| 3482257 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.68 | 55.0 | 4.38e-01 | 87.3% | 76.0% |
| 3935405 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.68 | 53.0 | 4.76e-01 | 85.7% | 78.9% |
| 3601417 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.68 | 57.0 | 5.82e-01 | 100.0% | 98.3% |
| 3726717 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.68 | 50.0 | 4.01e-01 | 79.4% | 41.6% |
| 3935404 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.67 | 51.0 | 4.54e-01 | 82.5% | 78.9% |
| 3635575 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.67 | 50.0 | 4.86e-01 | 82.5% | 74.0% |
| 3575366 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.66 | 51.0 | 4.47e-01 | 84.1% | 72.6% |
| 3783961 | 901.1.1.1 ↗ | few secondary structure elements › ADA_N-like domain › ADA_N-like domain › ADA_N-like domain › Ada_Zn_binding | 0.65 | 45.0 | 4.44e-01 | 87.3% | 67.1% |
| 2544590 | 2.1.1.58 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF35_N | 0.62 | 49.0 | 3.96e-01 | 84.1% | 66.9% |
| 3600598 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 54.0 | 4.23e-01 | 100.0% | 89.3% |
| 3783890 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.61 | 54.0 | 4.23e-01 | 100.0% | 95.6% |
| 3655904 | 221.1.1.82 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PADRE | 0.61 | 44.0 | 4.29e-01 | 87.3% | 69.4% |
| 3252925 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 47.0 | 4.33e-01 | 85.7% | 95.3% |
| 3715750 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.61 | 52.0 | 3.16e-01 | 100.0% | 32.8% |
| 3799247 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.60 | 47.0 | 3.21e-01 | 90.5% | 73.5% |
| 4008377 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 51.0 | 4.32e-01 | 100.0% | 83.6% |
| 4424192 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 49.0 | 4.05e-01 | 96.8% | 53.3% |
| 4009784 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.58 | 50.0 | 4.51e-01 | 100.0% | 80.0% |
| 3739712 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.58 | 50.0 | 4.03e-01 | 100.0% | 90.0% |
| 3551231 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.58 | 50.0 | 4.28e-01 | 100.0% | 100.0% |
| 3897496 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 47.0 | 4.32e-01 | 96.8% | 81.2% |
| 3967277 | 223.1.1.57 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif | 0.57 | 44.0 | 3.10e-01 | 85.7% | 28.6% |
| 4366927 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.56 | 48.0 | 3.44e-01 | 100.0% | 89.3% |
| 3909604 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 45.0 | 4.38e-01 | 96.8% | 81.3% |
| 3794632 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.56 | 48.0 | 3.74e-01 | 100.0% | 83.8% |
| 4046011 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.56 | 48.0 | 3.34e-01 | 100.0% | 74.3% |
| 3289280 | 223.1.1.42 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_C | 0.56 | 41.0 | 3.34e-01 | 77.8% | 98.3% |
| 4945022 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 43.0 | 3.72e-01 | 84.1% | 92.0% |
| 4406921 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 42.0 | 3.85e-01 | 84.1% | 84.7% |
| 4006605 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 42.0 | 3.22e-01 | 84.1% | 91.6% |
| 5031517 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.54 | 39.0 | 2.27e-01 | 76.2% | 19.5% |
| 5023733 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 37.0 | 2.49e-01 | 73.0% | 21.1% |
| 4168173 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.53 | 45.0 | 3.26e-01 | 100.0% | 89.8% |
| 144307 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.53 | 36.0 | 3.04e-01 | 71.4% | 72.0% |
| 4517004 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.53 | 45.0 | 2.76e-01 | 100.0% | 37.6% |
| 4175643 | 375.5.1.1 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind | 0.53 | 40.0 | 3.85e-01 | 81.0% | 78.7% |
| 4486866 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.53 | 37.0 | 2.81e-01 | 74.6% | 49.1% |
| 4944130 | 314.1.1.50 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › HGTP_anticodon | 0.53 | 46.0 | 2.86e-01 | 100.0% | 25.3% |
| 5035538 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.52 | 44.0 | 2.79e-01 | 100.0% | 25.5% |
| 3971649 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 43.0 | 3.22e-01 | 100.0% | 60.0% |
| 4206080 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.51 | 43.0 | 2.79e-01 | 100.0% | 29.0% |