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MT325768.1__QJI52386.1__X__00089

Bact-Vir

MT325768.1__QJI52386.1__X__00089

Identity

Accession:
MT325768 ↗
Kingdom:
phage

Quality

95.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Psychrobacillus_phage_Perkons

TaxID: 2729574

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-99
PDB
Domain cluster: rep: NC_055031.1__YP_010082495.1__KMD20_gp60__00060__D4-103
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 41.0 4.68e-01 75.5% 82.7%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.64 43.0 4.00e-01 86.7% 54.8%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.62 50.0 4.31e-01 85.7% 69.5%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 37.0 4.02e-01 71.4% 71.2%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.62 45.0 4.13e-01 85.7% 59.2%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 49.0 4.27e-01 87.8% 69.7%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.61 53.0 4.63e-01 100.0% 95.5%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 3.32e-01 86.7% 29.3%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.60 48.0 4.48e-01 85.7% 80.2%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 37.0 4.36e-01 81.6% 100.0%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 46.0 4.22e-01 91.8% 67.2%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.57 38.0 3.03e-01 95.9% 34.0%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 45.0 4.03e-01 88.8% 59.6%
7clyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 44.0 3.62e-01 86.7% 87.5%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.53 41.0 3.18e-01 85.7% 88.4%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 46.0 3.50e-01 95.9% 79.0%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 34.0 3.48e-01 71.4% 65.7%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 41.0 3.86e-01 92.9% 71.1%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.50 34.0 3.21e-01 84.7% 56.7%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 41.0 3.74e-01 91.8% 64.5%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.42e-01 74.5% 64.5%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.50 42.0 3.93e-01 94.9% 99.2%
4i3gA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.51e-01 84.7% 65.8%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.50 40.0 3.77e-01 88.8% 91.8%
2d5wA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.50 38.0 3.65e-01 81.6% 90.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607609 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.66 38.0 2.94e-01 85.7% 25.6%
3597007 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.66 45.0 3.68e-01 87.8% 39.3%
3600093 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.65 52.0 4.70e-01 87.8% 76.3%
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.65 44.0 4.88e-01 72.4% 92.0%
3520733 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.64 54.0 3.54e-01 88.8% 24.7%
1108141 881.1.1.12 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Tsi3 0.64 44.0 4.03e-01 86.7% 54.0%
3897238 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.64 56.0 4.07e-01 94.9% 36.6%
3683658 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.64 44.0 2.96e-01 74.5% 19.2%
3663874 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.64 43.0 2.87e-01 72.4% 17.1%
3782284 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 47.0 3.65e-01 85.7% 36.2%
3223921 2484.1.1.259 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 0.64 45.0 4.66e-01 73.5% 80.0%
3676745 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.63 43.0 3.87e-01 72.4% 49.3%
3250157 7504.1.1.2 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.63 47.0 3.91e-01 81.6% 90.3%
3744012 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.63 51.0 3.48e-01 88.8% 26.1%
3657011 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.63 51.0 3.49e-01 87.8% 28.2%
5794 295.1.1.7 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.62 50.0 4.31e-01 85.7% 69.5%
3467382 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 51.0 3.49e-01 88.8% 27.5%
3216630 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 3.32e-01 85.7% 25.4%
3239720 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.61 42.0 2.68e-01 73.5% 13.2%
3445028 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 44.0 4.77e-01 83.7% 92.5%
3781121 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.28e-01 86.7% 30.3%
3604380 504.1.1.1 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.59 44.0 3.89e-01 79.6% 60.0%
None — 0.58 47.0 2.88e-01 90.8% 14.6%
3808110 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.58 41.0 3.64e-01 75.5% 57.3%
4508852 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 45.0 4.33e-01 85.7% 89.6%
3649691 2004.1.1.299 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.57 40.0 2.98e-01 85.7% 28.0%
4528518 11.8.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like › Nakanori 0.57 45.0 3.72e-01 84.7% 58.8%
4947486 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 36.0 3.23e-01 77.6% 45.9%
3615124 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.56 45.0 3.12e-01 88.8% 32.5%
4992590 881.2.1.0 ↗ a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.56 48.0 3.98e-01 95.9% 56.0%
3696318 5.1.4.249 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.55 43.0 2.86e-01 83.7% 31.4%
3489971 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 37.0 3.51e-01 71.4% 74.2%
3168111 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 47.0 3.21e-01 100.0% 38.4%
3487450 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.53 47.0 4.19e-01 100.0% 70.3%
3398893 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.52 37.0 3.32e-01 74.5% 51.7%
4343392 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 4.01e-01 88.8% 76.4%
4973090 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.51 38.0 3.87e-01 81.6% 87.0%
3742201 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.51 43.0 3.86e-01 92.9% 67.4%
3282030 331.3.1.23 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF5914 0.51 37.0 3.05e-01 75.5% 95.4%