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MT325768.1__QJI52421.1__X__00124

Bact-Vir

MT325768.1__QJI52421.1__X__00124

Identity

Accession:
MT325768 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Psychrobacillus_phage_Perkons

TaxID: 2729574

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dlxA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.70 47.0 3.95e-01 70.1% 85.8%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.66 43.0 4.54e-01 70.1% 77.2%
1w97L01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.62 57.0 4.28e-01 100.0% 88.3%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.61 40.0 3.54e-01 70.1% 45.9%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.59 51.0 4.23e-01 98.5% 85.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 39.0 3.31e-01 70.1% 42.7%
4c81A00 3.30.1330.50 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 0.58 47.0 3.64e-01 91.0% 90.4%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 44.0 3.84e-01 86.6% 52.7%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 48.0 3.46e-01 100.0% 82.8%
7fj9B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 50.0 3.85e-01 98.5% 94.2%
3wxmB03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.56 39.0 3.41e-01 100.0% 45.8%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 47.0 3.38e-01 98.5% 74.8%
3i3fB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.56 42.0 3.40e-01 79.1% 81.2%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.56 48.0 4.04e-01 100.0% 86.8%
1gx1A00 3.30.1330.50 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 0.56 47.0 3.67e-01 97.0% 93.6%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 40.0 2.83e-01 79.1% 89.0%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 41.0 3.20e-01 82.1% 79.5%
6izhE00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.55 40.0 3.36e-01 79.1% 90.9%
2yx6D01 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.54 47.0 4.15e-01 98.5% 93.1%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.96e-01 95.5% 90.2%
3v4dB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.54 40.0 3.27e-01 79.1% 81.6%
2ig8A00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.54 39.0 3.11e-01 79.1% 76.1%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.53 40.0 3.61e-01 100.0% 60.0%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.53 38.0 3.44e-01 79.1% 80.0%
1vb3A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 3.27e-01 100.0% 53.7%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.86e-01 91.0% 68.2%
6ogmD00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 38.0 3.96e-01 97.0% 90.2%
3m20A00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 38.0 3.97e-01 97.0% 91.5%
2ciqA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 45.0 2.95e-01 100.0% 96.9%
1u2kA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.50 38.0 3.11e-01 80.6% 79.7%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 35.0 2.44e-01 76.1% 89.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3674329 2484.1.1.11 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.67 53.0 4.23e-01 86.6% 60.7%
134360 252.2.1.3 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.67 43.0 4.43e-01 70.1% 68.8%
3597564 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 52.0 4.84e-01 91.0% 67.8%
3271679 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 43.0 3.41e-01 70.1% 31.7%
4975312 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.64 56.0 5.05e-01 100.0% 73.7%
4237534 330.7.1.1 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › DUF905 0.64 47.0 4.90e-01 77.6% 86.7%
4029951 220.1.1.310 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29397, PF29398 0.64 49.0 3.86e-01 83.6% 39.3%
3608938 220.1.1.167 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.64 52.0 4.47e-01 97.0% 54.8%
3614247 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 47.0 3.85e-01 79.1% 51.2%
3937740 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.64 43.0 3.48e-01 70.1% 37.7%
5052285 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 4.49e-01 91.0% 66.7%
3996000 220.1.1.167 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.63 50.0 4.25e-01 89.6% 53.0%
3509523 220.1.1.167 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.63 51.0 4.13e-01 97.0% 45.0%
3839150 2484.1.1.80 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C 0.62 53.0 4.61e-01 100.0% 87.3%
3790685 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 3.89e-01 94.0% 43.8%
3602037 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 3.97e-01 94.0% 47.5%
4975908 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.61 52.0 3.73e-01 100.0% 87.7%
3170080 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.61 54.0 4.83e-01 100.0% 72.6%
3959120 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 47.0 4.40e-01 83.6% 78.8%
3805897 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 3.71e-01 94.0% 36.9%
4945439 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 53.0 4.18e-01 100.0% 79.3%
3703431 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 3.74e-01 94.0% 45.1%
3702172 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.60 50.0 5.08e-01 91.0% 100.0%
4263806 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.60 41.0 4.38e-01 77.6% 83.1%
3171307 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.60 45.0 3.88e-01 85.1% 75.7%
5832 4292.1.1.1 ↗ a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG 0.59 40.0 3.44e-01 70.1% 44.0%
3839289 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.59 44.0 4.20e-01 82.1% 91.3%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.59 42.0 4.32e-01 76.1% 81.2%
3379168 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.58 38.0 3.96e-01 73.1% 71.4%
3988984 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 36.0 2.77e-01 70.1% 25.0%
3923801 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.58e-01 82.1% 51.6%
3204926 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.58 39.0 3.90e-01 70.1% 70.0%
4568757 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.57 44.0 4.63e-01 88.1% 98.3%
4995200 3407.1.1.2 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.57 50.0 4.24e-01 100.0% 75.7%
3703972 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 3.35e-01 74.6% 46.4%
4952128 2484.4.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.57 49.0 4.21e-01 97.0% 87.3%
3605776 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 41.0 2.42e-01 74.6% 28.1%
4823114 5.1.4.265 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.56 40.0 3.10e-01 74.6% 56.0%
4508860 301.5.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF › 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF › YgbB 0.56 45.0 3.53e-01 91.0% 92.3%
4887412 2004.1.1.489 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII, PF27431 0.56 41.0 2.67e-01 79.1% 89.9%
4565271 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.56 45.0 3.63e-01 86.6% 48.0%
3430385 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.55 37.0 3.12e-01 70.1% 62.4%
3992229 610.2.1.2 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Gelsolin, Sec23_helical 0.54 38.0 2.66e-01 74.6% 46.3%
3905824 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.54 42.0 2.71e-01 88.1% 52.5%
1833186 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.53 37.0 2.86e-01 100.0% 32.9%
3708861 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.52 35.0 2.82e-01 73.1% 54.7%
4176611 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.52 35.0 3.22e-01 71.6% 93.7%
4228038 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.52 43.0 2.94e-01 100.0% 59.7%
3960817 605.1.1.168 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Aldedh 0.51 30.0 2.58e-01 83.6% 33.6%
4999237 301.2.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.50 39.0 2.78e-01 100.0% 26.2%
3781230 1013.1.1.1 ↗ beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 0.50 41.0 2.96e-01 92.5% 31.0%