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MT325768.1__QJI52445.1__X__00148

Bact-Vir

MT325768.1__QJI52445.1__X__00148

Identity

Accession:
MT325768 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Psychrobacillus_phage_Perkons

TaxID: 2729574

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-42
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6yllA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 50.0 4.02e-01 97.4% 93.9%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 47.0 3.37e-01 100.0% 59.5%
3oulA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 45.0 2.86e-01 97.4% 14.9%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 45.0 3.65e-01 89.5% 43.2%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 50.0 3.34e-01 100.0% 59.2%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 44.0 3.47e-01 100.0% 37.5%
1jllB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 52.0 3.37e-01 100.0% 36.8%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 44.0 3.60e-01 94.7% 45.0%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.57 44.0 2.59e-01 100.0% 35.6%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 42.0 3.28e-01 89.5% 37.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.56 40.0 3.89e-01 86.8% 70.8%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 42.0 2.98e-01 89.5% 26.9%
1e6vC00 3.90.320.20 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit 0.55 47.0 2.86e-01 100.0% 19.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 43.0 3.40e-01 94.7% 47.2%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 47.0 3.13e-01 100.0% 37.4%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 42.0 3.45e-01 97.4% 73.3%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 2.82e-01 89.5% 47.8%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 2.62e-01 89.5% 17.2%
2bjoA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 38.0 3.14e-01 89.5% 57.4%
4ds2B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 40.0 2.83e-01 94.7% 32.7%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 40.0 2.76e-01 94.7% 23.5%
2v5nA02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.52 39.0 2.92e-01 97.4% 76.3%
5jenA02 3.90.640.20 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase 0.52 38.0 3.03e-01 100.0% 35.4%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.21e-01 100.0% 42.6%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 2.70e-01 89.5% 50.0%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.51 41.0 2.60e-01 100.0% 48.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4249852 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.69 56.0 3.34e-01 94.7% 12.7%
3488610 383.1.2.0 ↗ few secondary structure elements › Defensin-like › Defensin-related › Laterosporulin 0.68 54.0 5.35e-01 97.4% 87.5%
3735788 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 55.0 4.10e-01 100.0% 37.0%
4994578 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.65 50.0 3.53e-01 86.8% 27.2%
3279680 7567.1.1.1 ↗ a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.64 47.0 2.91e-01 89.5% 24.0%
4950288 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.63 49.0 3.55e-01 89.5% 31.3%
3588192 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.62 45.0 4.23e-01 86.8% 62.0%
3263073 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.61 50.0 3.14e-01 100.0% 54.3%
3309384 9.13.1.1 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.61 45.0 3.39e-01 92.1% 48.7%
3941019 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.60 42.0 3.05e-01 71.1% 43.5%
3230100 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 47.0 4.22e-01 89.5% 65.5%
3996695 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.60 46.0 4.20e-01 89.5% 65.5%
4039199 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.59 48.0 3.02e-01 100.0% 52.0%
3921237 391.1.2.13 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1-VW_OTOGL 0.59 44.0 2.90e-01 89.5% 20.0%
3333577 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 46.0 3.63e-01 97.4% 38.9%
3906671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.23e-01 89.5% 80.0%
3613411 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.57 46.0 3.24e-01 100.0% 24.0%
5065934 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 46.0 3.75e-01 100.0% 70.6%
5067682 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 3.42e-01 89.5% 40.0%
3738189 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.57 43.0 3.40e-01 92.1% 88.4%
4024062 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 3.82e-01 100.0% 50.0%
3610335 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 43.0 2.81e-01 94.7% 17.7%
3925915 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.56 42.0 3.98e-01 86.8% 70.0%
3738689 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.56 46.0 3.63e-01 97.4% 43.5%
4032314 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 2.99e-01 84.2% 80.0%
3232550 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 44.0 3.59e-01 100.0% 56.5%
3201221 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.55 42.0 3.13e-01 89.5% 35.2%
3231216 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 43.0 4.07e-01 100.0% 72.0%
5022323 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 3.56e-01 89.5% 55.4%
4438458 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.54 39.0 2.39e-01 97.4% 10.3%
3740784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.33e-01 94.7% 63.5%
5039070 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.53 41.0 3.01e-01 97.4% 30.0%
3528870 391.1.2.13 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1-VW_OTOGL 0.53 39.0 2.93e-01 89.5% 27.5%
2529925 11.1.5.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GBS104-like_Ig 0.53 39.0 3.28e-01 89.5% 42.0%
3739582 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.79e-01 94.7% 75.9%
3593394 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 39.0 2.79e-01 86.8% 26.9%
4947171 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.52 41.0 3.08e-01 97.4% 34.3%
4978537 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.52 36.0 2.62e-01 73.7% 36.7%
3741335 109.4.1.338 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.52 43.0 2.58e-01 100.0% 33.6%
5050547 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.52 39.0 2.86e-01 86.8% 30.4%
1553111 2.1.1.5 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N 0.51 38.0 2.61e-01 86.8% 22.3%
3588108 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.51 36.0 3.50e-01 86.8% 66.0%
4990259 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.50 37.0 2.73e-01 89.5% 56.2%
4856335 2.1.1.5 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N 0.50 39.0 2.68e-01 89.5% 23.7%
4028705 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.50 40.0 3.00e-01 100.0% 40.8%