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MT325768.1QJI52461.1X__00164

Bact-Vir

MT325768.1__QJI52461.1__X__00164

Identity

Accession:: MT325768 ↗
Kingdom:: phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Psychrobacillus_phage_Perkons

TaxID: 2729574

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-104

PDB

Domain cluster: rep: OL689227.1__UXX42191.1__X__00023__D6-101

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06782.17 best	UPF0236	41.8	9.00e-11	90.4%	22.2%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ddmA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.70	35.0	3.33e-01	99.0%	40.0%
2lnjA00	3.40.1000.10	Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich	0.55	37.0	3.25e-01	70.2%	57.6%
5wpjA02	3.30.70.420	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain	0.55	37.0	3.74e-01	71.2%	87.0%
3ccyA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	37.0	3.26e-01	70.2%	77.6%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4255362	3826.1.1.22 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › UPF0236	0.91	86.0	7.75e-01	100.0%	81.5%
4043451	3826.1.1.22 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › UPF0236	0.89	84.0	6.64e-01	100.0%	56.4%
4971602	316.1.1.45 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF4269	0.59	41.0	3.61e-01	71.2%	68.9%
5076310	316.1.1.2 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2	0.59	40.0	3.55e-01	71.2%	65.8%
5031992	316.1.1.2 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2	0.58	40.0	3.53e-01	71.2%	65.8%
4933653	304.31.1.1 ↗	a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red	0.57	39.0	3.83e-01	71.2%	82.6%
4943953	304.31.1.1 ↗	a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red	0.56	39.0	3.79e-01	72.1%	83.5%
5064606	304.31.1.1 ↗	a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red	0.55	38.0	3.82e-01	72.1%	87.3%
1182809	304.31.1.1 ↗	a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red	0.54	37.0	3.70e-01	71.2%	84.7%
5072187	321.1.1.7 ↗	a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2	0.54	38.0	2.53e-01	72.1%	55.6%
4943737	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.53	36.0	3.15e-01	70.2%	52.5%
3387224	310.3.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related	0.53	39.0	3.64e-01	76.9%	73.1%
3650282	243.5.1.8 ↗	a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › DUF7074	0.52	36.0	3.84e-01	71.2%	100.0%
3926039	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.51	35.0	3.60e-01	72.1%	96.0%

D2 medium residues 105-240_385-434

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06782.17 best	UPF0236	50.6	1.90e-13	73.1%	30.8%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1i6zA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.53	25.0	2.92e-01	77.4%	60.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4660860	2484.1.1.222 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236	0.79	66.0	5.64e-01	85.5%	98.9%
5030453	2484.1.1.101 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240	0.68	59.0	5.39e-01	90.9%	97.0%
5017718	2484.1.1.115 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66	0.67	58.0	5.39e-01	90.9%	95.2%